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  3. RAFL08-19-H17

RAFL08-19-H17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07938)

full reading [+] show sequence

Nucleotide sequence: RAFL08-19-H17 - full reading 
AACCAAGTCA ATCATTCTTC ATTGATCTTC TCCGATTTGA AATCGCCGGC 
GAAAATGGAA TCCTCCGGCG ACAAGCAAAC TTCTTCTCTT TACCCTACTG 
TTGACACATC CAATCCCGAA GCTCCTATAA ACCCTAGCTC ATCATCTTCT 
ACTAACAATC TCTATCCTTC TCTCGATATG AATGATCTCG CTCGTAATCT 
CTTCCCTGAA CAACCAGAGA CGAGTTCTAT TCCGGTTTCA GCTCCTCCCG 
CTGCGACGGA GGAAGTAATT TTGAAAATCT CCGGCGCGAT TCTTCATTTA 
ATCGACAAAT CTTACAGCGT CGAGCTCGCT TGCGGTGATC TTGAGATCAT 
CCGTATTGTT CAAGGAGAGA ATGTTGTCGC TGTTCTCGCT AGTGTCTCCG 
ATGAGATTCA ATGGCCGTTG ACTAAGGATG AGAACTCTGT CAAGGTCGAT 
GAGTCTCATT ACTTCTTCAC GCTTCGTCCT ACCAAAGAGA TCTCACATGA 
TTCAAGCGAC GAAGAAGACG GAGATGGAGG GAAAAACACT AACGAGATGT 
TGAACTACGG ACTTACAATT GCTTCTAAAG GTCAAGAGCA TTTACTGGTG 
GAGCTTGAGA AGATCTTGGA GGATTATAGT AGTTTCTCTG TGCAGGAGGT 
GTCAGAGGAA GCGAAGGAAG CAGGTGAAAA GGTTTTGGAT GTGACGGTGG 
CGAGAGAGAC GTCTCCGGTG GAGCTTACTG GGGAAAGGAA AGAGATTGTG 
GAGAGGCAAT GTTCTGCTTA TTGGACTACT TTGGCTCCGA ATGTGGAGGA 
TTATAGCGGG AAGGCGGCGA AGCTGATTGC AACTGGCTCA GGACATTTGA 
TAAAAGGGAT TCTTTGGTGT GGAGATGTGA CTATGGATAG GCTTATTTGG 
GGAAATGGTT TCATGAAAAG GAGGTTGTCA AAGGCTGAGA AGGAGAGTGA 
AGTTCACCCT GACACCTTGA AAAGAATCAG AAGAGTGAAG AGGATGACCA 
AAATGACAGA GAGTGTAGCA AACAGCATAC TGTCTGGAGT CCTTAAAGTT 
TCTGGATTCT TCACAAGTTC AGTGGCAAAC ACCAAAGTAG GAAAGAAATT 
CTTCAGCCTT CTTCCTGGAG AAGTCATCCT TGCATCTCTT GACGGATTCA 
ATAAGGTCTG TGACGCTGTT GAAGTAGCTG GGAGGAATGT AATGTCAACC 
TCTTCCACTG TTACAACCGA ACTCGTTGAT CACAAGTATG GTGGTAAAGC 
GGCTGAGGCG ACAAACGAAG GGCTCGATGC AGCAGGATAT GCGCTTGGCA 
CAGCCTGGGT TGCTTTCAAA ATAAGAAAGG CTATTAACCC GAAGAGTGTA 
CTCAAGCCTT CGACGCTTGC AAAAACCGCC ATTAGATCTG CAGCTTCACA 
AAAAAAAGCC TAGTAAGGCT GCCTGATGAA GCAAAACAGA CTCATTGGTC 
CTGTTTGTTT GTATCGTCTT GTTGTCTTTT GATAAATAAG TTAAACTAAA 
AAGAGGTGTG GATTAGTAGT TGTTGTGAAG TGTTTATGTT TCTCTATGAG 
AATCATGTAA TGTCTCTGAT TTGATTCGGA ATATGTGCTG TATGTGTAAG 
TGGTCAAATC AAGATTCCTT GAAATTAGTT TTCATGTTTT TTT

Gene models with high sequence identity

  1. AT2G17840.1 [+] show detail - Senescence/dehydration-associated protein-related
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther SUBFAMILY NOT NAMED 0
HMMPanther FAMILY NOT NAMED 0
HMMPfam Senescence/spartin-associated 3.1e-176

See the detailed result >

AT2G17840.1

Model type
Protein coding
Short Description
Senescence/dehydration-associated protein-related
Curator Summary
Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis.
Computational Description
EARLY-RESPONSIVE TO DEHYDRATION 7 (ERD7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water deprivation, response to high light intensity, response to salt stress, response to cold; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Senescence/spartin-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: Senescence/dehydration-associated protein-related (TAIR:AT4G35985.1); Has 250 Blast hits to 250 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 66; Fungi - 39; Plants - 134; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-19-H17 introduced

  • F22729 - Specific phenotypes were NOT observed.
  • F26136 - seed::increased size / seed::increased length / seed::decreased width

Mutant lines with disrupted or induced

8 mutant lines found