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  3. RAFL08-19-J09

RAFL08-19-J09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05027)

full reading [+] show sequence

Nucleotide sequence: RAFL08-19-J09 - full reading 
AAAAACAATT GTCTACATTC ATCTTCTTCT TCTTCAAACA AAAAATGGGT 
TTCTTAAAGT TATCTCCAAT GATCCTTCTC CTAGCAATGA TCGGCGTTTC 
ATATGCCATG GACATGTCAA TCATCTCCTA CGACGAAAAC CACCACATCA 
CCACCGAGAC CAGCCGTAGC GACTCGGAGG TTGAGAGAAT CTACGAAGCG 
TGGATGGTGG AACACGGGAA GAAGAAGATG AATCAAAACG GTCTTGGTGC 
AGAGAAAGAT CAAAGATTCG AGATCTTTAA AGATAATCTT CGTTTCATCG 
ATGAACATAA CACCAAAAAC CTCAGTTATA AACTTGGTTT AACCCGGTTT 
GCTGATTTAA CCAATGAGGA GTACCGATCT ATGTACCTTG GTGCTAAACC 
GACCAAGAGG GTTTTGAAAA CCAGTGATCG GTATCAGGCG CGTGTTGGTG 
ACGCGCTTCC TGATTCGGTT GACTGGAGAA AAGAAGGTGC CGTCGCTGAT 
GTTAAAGATC AAGGAAGCTG TGGGAGTTGT TGGGCATTCT CAACTATTGG 
AGCAGTGGAA GGAATAAACA AGATTGTGAC AGGAGATTTA ATATCTTTGT 
CTGAACAAGA ATTGGTTGAT TGTGACACAT CTTATAACCA AGGATGTAAT 
GGTGGTTTAA TGGACTATGC GTTTGAGTTT ATTATCAAAA ATGGTGGTAT 
TGATACCGAA GCGGATTATC CTTACAAGGC TGCTGATGGT CGTTGTGACC 
AGAACAGGAA AAATGCTAAG GTTGTTACCA TTGATTCATA TGAAGATGTC 
CCTGAGAACA GCGAGGCGTC TCTAAAGAAA GCTTTGGCTC ACCAGCCTAT 
TAGTGTCGCC ATTGAAGCGG GTGGTCGCGC TTTCCAGCTC TATTCTTCGG 
GTGTATTTGA TGGACTTTGT GGGACGGAGT TAGACCACGG TGTTGTGGCT 
GTGGGTTATG GAACCGAGAA CGGAAAGGAC TACTGGATTG TGAGAAACTC 
ATGGGGAAAC AGATGGGGAG AGAGCGGATA CATAAAGATG GCACGTAACA 
TTGAAGCGCC AACAGGAAAG TGTGGAATCG CTATGGAGGC TTCGTATCCG 
ATCAAGAAAG GTCAGAACCC ACCAAACCCT GGCCCGTCAC CACCATCTCC 
CATTAAGCCA CCAACCACAT GTGACAAGTA CTTCTCTTGC CCTGAGAGCA 
ACACTTGTTG TTGTCTCTAC AAGTATGGTA AGTACTGCTT CGGATGGGGA 
TGTTGCCCGC TCGAAGCTGC TACTTGCTGC GATGATAACT CAAGTTGCTG 
TCCTCATGAG TACCCGGTTT GTGACGTTAA CCGCGGAACC TGTTTGATGA 
GCAAGAACAG TCCGTTTAGC GTGAAGGCTT TAAAGCGTAC ACCCGCAATA 
CCGTTCTGGG CAAAGAGCAG AAAGCACATT GCGTAAGAAG AGGAAGACAA 
AAACATTGAG AATTCATCAA AAGCATTTTA TGTTGTTGTT GTTCAGATTT 
AAAAATTGCT GATTCTGCTG CTGAGGTTTT CTGTACATAT AAAACCTCTC 
CCTAAGTTTC ATTCAGTTTC ATCATTGTTA AAGTAACTAA CTCAGAACAA 
ATGGGTTTGG TTATTAATCT CTTTCAAC

Gene models with high sequence identity

  1. AT5G43060.1 [+] show detail - Granulin repeat cysteine protease family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Proteinase inhibitor I29, cathepsin propeptide 3.6e-20
HMMSmart Peptidase C1A, papain C-terminal 1.5e-130
HMMSmart Granulin 1.4e-25
Gene3D no description 1.2e-117
superfamily Cysteine proteinases 3.3e-115
superfamily Granulin repeat 2.8e-13
PatternScan Peptidase, cysteine peptidase active site 0
PatternScan Peptidase, cysteine peptidase active site 0
PatternScan Peptidase, cysteine peptidase active site 0
HMMPanther CYSTEINE PROTEASE 6.9e-221
HMMPanther Peptidase C1A, papain 6.9e-221
HMMPfam Peptidase C1A, papain C-terminal 1.3e-87
HMMPfam Proteinase inhibitor I29, cathepsin propeptide 1.6e-16
HMMPfam Granulin 5.1e-12
FPrintScan Peptidase C1A, papain C-terminal 1.2e-10
FPrintScan Peptidase C1A, papain C-terminal 1.2e-10
FPrintScan Peptidase C1A, papain C-terminal 1.2e-10

See the detailed result >

AT5G43060.1

Model type
Protein coding
Short Description
Granulin repeat cysteine protease family protein
Computational Description
Granulin repeat cysteine protease family protein; FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Granulin (InterPro:IPR000118), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Granulin repeat cysteine protease family protein (TAIR:AT1G47128.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-19-J09 introduced

  • F07507 - seed::increased size / seed::increased length
  • F09018 - Specific phenotypes were NOT observed.
  • F14616 - Specific phenotypes were NOT observed.
  • F15335 - seed::decreased width
  • F18906 - Specific phenotypes were NOT observed.
  • F19535 - Specific phenotypes were NOT observed.
  • F23943 - Specific phenotypes were NOT observed.
  • F26739 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found