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  3. RAFL08-19-M09

RAFL08-19-M09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05034)

full reading [+] show sequence

Nucleotide sequence: RAFL08-19-M09 - full reading
GATCTCATTT GCTCTGCAAT GGCGACTACC ATGAATGCTG CTGTTTCTCT 
CACATCTTCA AACTCTTCTT CTTTTCCCGC TACAAGTTGT GCCATTGCTC
CTGAAAGGAT CAGGTTTACT AAGGGTGCTT TTTACTACAA AAGCAACAAT
GTAGTGACAG GTAAAAGAGT GTTTTCCATA AAAGCACAAA TCACAACAGA
AACAGATACT CCTACTCCTG CAAAGAAAGT AGAGAAAGTG TCAAAGAAGA
ACGAGGAAGG TGTGATTGTT AACAGGTACA GACCAAAAGA GCCTTACACT
GGAAAATGCC TTCTCAACAC CAAAATCACA GCTGATGATG CTCCTGGAGA
GACCTGGCAC ATGGTTTTCA GCCATCAAGG AGAAATCCCG TACAGAGAAG
GACAATCTGT TGGTGTGATT GCAGATGGAA TTGACAAGAA TGGAAAGCCT
CACAAGGTCA GACTTTACTC CATTGCAAGC AGCGCTCTTG GAGATCTCGG
CAATTCTGAA ACCGTTTCTT TGTGTGTTAA AAGACTTGTT TATACTAATG
ACCAAGGAGA GACTGTTAAA GGAGTTTGCT CAAATTTCTT GTGTGATTTG
GCACCCGGAA GTGATGTTAA GCTGACTGGT CCTGTAGGCA AAGAAATGCT
TATGCCAAAG GATCCAAACG CCACCGTTAT TATGCTTGCC ACAGGGACAG
GAATTGCTCC TTTCAGGTCT TTCTTATGGA AGATGTTCTT TGAGAAACAT
GATGACTACA AGTTCAATGG CTTAGCTTGG TTGTTCTTGG GTGTACCAAC
CACTAGCTCT TTGCTCTACC AAGAGGAGTT TGATAAGATG AAAGCAAAGG
CCCCCGAGAA CTTCAGGGTG GATTACGCGA TAAGCAGAGA ACAAGCGAAC
GATAAAGGAG AGAAAATGTA TATCCAGACT CGGATGGCGC AATACGCAGC
TGAGTTATGG GAGTTGTTGA AGAAAGACAA CACTTTTGTT TACATGTGTG
GACTCAAGGG AATGGAGAAA GGAATTGATG ACATTATGGT CTCATTGGCT
GCAAATGACG GTATTGACTG GTTTGATTAC AAGAAGCAGT TGAAGAAGGC
AGAGCAATGG AACGTTGAAG TCTACTGATC AAAAAGCCTT TGACATTTCT
GTAGCAAAGT ATAGCTGAAC AAAACTGTAA TTTTCGCTTC TGAATTTCTG
TATTTTGAAG ATAAGTTTTT TAGATATGTT ATACTAAAAA AAGAGTTCTT
TAATCATTAT CATTTACTTC TTCC

Gene models with high sequence identity

  1. AT1G20020.1 [+] show detail - ferredoxin-NADP(+)-oxidoreductase 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 2.7e-26
FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 2.7e-26
FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 2.7e-26
FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 2.7e-26
FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 2.7e-26
FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 2.7e-26
FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 2.7e-26
FPrintScan Flavoprotein pyridine nucleotide cytochrome reductase 2.7e-26
HMMPanther Ferredoxin Reductase 4.9e-138
HMMPanther FLAVODOXIN-RELATED 4.9e-138
HMMPIR Ferredoxin--NADP reductase 4.1e-275
Gene3D no description 1.4e-48
Gene3D no description 2e-46
superfamily Ferredoxin reductase-like, C-terminal NADP-li 2.5e-53
superfamily Riboflavin synthase-like beta-barrel 2.9e-42
HMMPfam Oxidoreductase FAD/NAD(P)-binding 8.8e-28
HMMPfam Oxidoreductase, FAD-binding domain 0.00012
ProfileScan Ferredoxin reductase-type FAD-binding domain 13.094

See the detailed result >

AT1G20020.1

Model type
Protein coding
Short Description
ferredoxin-NADP(+)-oxidoreductase 2
Curator Summary
Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma
Computational Description
ferredoxin-NADP(+)-oxidoreductase 2 (FNR2); FUNCTIONS IN: oxidoreductase activity, poly(U) RNA binding, NADPH dehydrogenase activity; INVOLVED IN: oxidation reduction, defense response to fungus, incompatible interaction, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Ferredoxin--NADP reductase (InterPro:IPR012146); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 1 (TAIR:AT5G66190.1); Has 6774 Blast hits to 6774 proteins in 1708 species: Archae - 20; Bacteria - 3604; Metazoa - 802; Fungi - 759; Plants - 616; Viruses - 0; Other Eukaryotes - 973 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL08-19-M09 introduced

  • F08408 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found