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Full-length cDNAs
RAFL08-19-M18

RAFL08-19-M18

RIKEN Arabidopsis Full-length cDNAs

AATATCTTCC TTTGTCAATC TCTTGAGAGT TTTTGCTTCC TCGTCTTCTT 
CGATTCATCA AACAGCGTGT GTTTTTTGTT TAGAGTTGGA AGAGACGAAT 
CGAATTTTGA AGCTTTCTTT TATGTCTGAC AAGATATCTC CGTTTTGTTG 
TCAATCTGGT TGCTTGGAAA ACACAGTCCT ACATCCAGAA TTAAGGACTA 
CTACTAGTTC CTCCATCACT TTAGGGTCTC GCATCTTCAA ACCGGAGATC 
CCTCCTCTTT CTCTCCACTT TTTTAGCTAA GAAGAATGGC GCTGCAGAAC 
ATTGGTGCTT CCAACCGTAA CGATGCCTTC TACAGGTACA AGATGCCTAA 
GATGGTTACC AAAACCGAAG GCAAAGGTAA TGGCATTAAG ACCAACATTA 
TCAACAATGT TGAGATTGCC AAAGCCTTGG CTAGACCGCC TTCTTATACG 
ACCAAGTACT TTGGTTGTGA GCTTGGAGCG CAGTCTAAGT TTGATGAGAA 
GACTGGGACG TCGCTTGTGA ATGGAGCTCA CAACACGTCT AAGCTTGCTG 
GGCTTTTGGA GAATTTTATT AAGAAGTTTG TTCAGTGTTA TGGATGTGGT 
AACCCGGAGA CTGAGATTAT TATTACGAAG ACGCAGATGG TGAATCTCAA 
GTGTGCTGCT TGTGGGTTTA TCTCTGAGGT CGACATGAGG GATAAGTTGA 
CTAATTTCAT TCTCAAGAAC CCACCTGAGC AGAAGAAGGT GTCAAAGGAT 
AAGAAAGCAA TGAGGAAAGC TGAGAAGGAG AGGCTTAAAG AAGGCGAGCT 
AGCTGATGAG GAGCAGAGAA AGCTGAAAGC TAAGAAGAAA GCATTGTCTA 
ACGGCAAGGA TTCTAAGACG TCTAAGAACC ATTCTTCTGA TGAGGATATA 
AGCCCGAAGC ATGATGAGAA TGCTCTAGAG GTGGATGAGG ATGAAGATGA 
TGATGATGGT GTCGAGTGGC AAACTGATAC TTCCCGAGAA GCTGCTGAGA 
AAAGAATGAT GGAACAGTTG AGTGCTAAAA CTGCCGAAAT GGTGATGCTC 
TCTGCAATGG AAGTAGAAGA GAAAAAGGCG CCCAAAAGCA AATCTAACGG 
GAACGTTGTG AAAACTGAGA ATCCTCCTCC GCAAGAGAAG AATCTCGTGC 
AGGATATGAA AGAGTATCTG AAGAAAGGGT CACCAATAAG CGCGCTCAAA 
AGTTTCATCT CGTCTCTCTC TGAACCTCCT CAAGACATCA TGGACGCACT 
CTTCAATGCT CTCTTTGATG GTGTGGGAAA GGGATTCGCC AAAGAAGTGA 
CTAAGAAGAA GAATTACTTA GCGGCTGCTG CAACAATGCA AGAGGATGGA 
TCACAGATGC ATCTGCTCAA TTCGATTGGG ACATTCTGTG GAAAGAATGG 
AAACGAAGAA GCTTTGAAAG AGGTGGCTCT GGTTCTTAAA GCATTGTACG 
ACCAAGACAT CATTGAGGAA GAGGTAGTGT TGGATTGGTA CGAAAAGGGT 
CTCACCGGAG CTGACAAAAG CTCGCCGGTT TGGAAGAATG TTAAGCCTTT 
TGTGGAGTGG CTTCAGAGCG CTGAGTCTGA GTCCGAAGAG GAGGATTGAG 
TCACTTTTTT CTTCCCTCCT AACTTTTCTT TGCGGCATTT CTTATAATAC 
TTCGTCAGTT TTCAGAATTC TTAAATCTTT TTGCTGTGTT CTTATAAAGA 
AACATCATCT ATTAAAGTTG TCTTCGTTTG GATTTGGTTT TGACGACTTT 
GGGAAATATT TATGTTTAAG AAGGTTTCAT TGGT

Gene models with high sequence identity

AT1G77840.1 [+] show detail - Translation initiation factor IF2/IF5
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	Armadillo-type fold	2.3e-31
superfamily	Translation initiation factor IF2/IF5, N-terminal	8e-24
superfamily	Translation initiation factor IF2/IF5, zinc-binding	3e-07
ProfileScan	eIF4-gamma/eIF5/eIF2-epsilon	27.535
HMMSmart	Translation initiation factor IF2/IF5	3.2e-61
HMMSmart	eIF4-gamma/eIF5/eIF2-epsilon	9e-35
HMMPanther	EUKARYOTIC TRANSLATION INITIATION FACTOR 5	3.8e-219
HMMPanther	EUKARYOTIC TRANSLATION INITIATION FACTOR	3.8e-219
Gene3D	eIF4-gamma/eIF5/eIF2-epsilon	5.8e-25
HMMPfam	Translation initiation factor IF2/IF5	8.9e-40
HMMPfam	eIF4-gamma/eIF5/eIF2-epsilon	3.6e-23

See the detailed result >

AT1G77840.1

Model type: Protein coding
Short Description: Translation initiation factor IF2/IF5
Computational Description: Translation initiation factor IF2/IF5; FUNCTIONS IN: binding, translation initiation factor activity; INVOLVED IN: translational initiation, regulation of translational initiation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF2/IF5, N-terminal (InterPro:IPR016189), Translation initiation factor IF2/IF5, zinc-binding (InterPro:IPR016190), eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Translation initiation factor IF2/IF5 (InterPro:IPR002735), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Translation initiation factor IF2/IF5 (TAIR:AT1G36730.1); Has 4597 Blast hits to 3869 proteins in 471 species: Archae - 198; Bacteria - 234; Metazoa - 1589; Fungi - 711; Plants - 391; Viruses - 12; Other Eukaryotes - 1462 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL08-19-M18 introduced

F29810 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

2 mutant lines found