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RAFL09-06-E05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05071)

full reading [+] show sequence

Nucleotide sequence: RAFL09-06-E05 - full reading 
ATAACTCACA CTCTCTCTTC AATCCTTTCC TTTCATTGTA GTTAAACAAA 
GATTACGATT ATGGCCACAT CAGCTATCCA ACAATCCTCC TTCGCCGGCC 
AAACGGCTCT CAAGCCCTCC AGCGACCTCA TCCAAAAGGT GGGCGTCTTG 
GGCGGTGGCC GTGTGACCAT GCGTCGTACC GTCAAGTCTA CTCCCCAAAG 
CATCTGGTAT GGACCAGACC GTCCCAAGTA CTTGGGACCA TTCTCGGAGA 
ACACACCGTC TTACTTAACT GGAGAATACC CCGGAGACTA CGGCTGGGAC 
ACCGCTGGAC TCTCGGCTGA CCCGGAGACA TTCGCTAAGA ACCGTGAGCT 
TGAAGTAATC CACAGCAGAT GGGCTATGTT GGGTGCTCTC GGATGCACAT 
TCCCTGAAAT TCTCTCCAAG AACGGTGTTA AATTCGGAGA AGCCGTGTGG 
TTCAAGGCAG GCTCTCAGAT TTTCTCAGAA GGAGGTCTTG ATTACCTCGG 
AAACCCTAAC TTGATCCACG CGCAAAGCAT CTTAGCCATC TGGGCTGTTC 
AAGTTGTGCT CATGGGGTTC ATTGAAGGCT ACAGAATCGG AGGTGGACCA 
CTCGGAGAAG GACTTGACCC GCTTTATCCC GGAGGTGCGT TCGACCCATT 
GAACTTGGCT GAGGATCCAG AGGCTTTCTC TGAGCTGAAG GTGAAGGAGC 
TCAAGAACGG TCGTCTTGCC ATGTTCTCTA TGTTTGGATT CTTTGTCCAA 
GCCATTGTTA CTGGTAAAGG TCCCATTGAG AACTTATTTG ATCATTTGGC 
TGATCCTGTG GCTAACAACG CCTGGTCTTA CGCTACTAAC TTTGTCCCCG 
GAAAGTAATT ATCTTATGTA TTTGCTTCAT AATCTCTCTG CTTTGTAAAC 
TCGTGATTGT GTAATATTGA CGTTTGATGT GAATTTGGCA CTTAATGATG 
TTTCTTGG

Gene models with high sequence identity

  1. AT2G05070.1 [+] show detail - photosystem II light harvesting complex gene 2.2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Chloroa_b-bind 2.9e-49
HMMPanther Chlorophyll A-B binding protein 9.9e-191
superfamily Chlorophyll a-b binding protein 6.3e-81

See the detailed result >

AT2G05070.1

Model type
Protein coding
Short Description
photosystem II light harvesting complex gene 2.2
Curator Summary
Encodes Lhcb2.2. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus.
Computational Description
photosystem II light harvesting complex gene 2.2 (LHCB2.2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: guard cell, juvenile leaf, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem II light harvesting complex gene 2.1 (TAIR:AT2G05100.1); Has 2376 Blast hits to 2314 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2060; Viruses - 0; Other Eukaryotes - 312 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-06-E05 introduced

  • F07326 - Specific phenotypes were NOT observed.
  • F09014 - Specific phenotypes were NOT observed.
  • F09404 - Specific phenotypes were NOT observed.
  • F11733 - Specific phenotypes were NOT observed.
  • F29122 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found