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Full-length cDNAs
RAFL09-06-F17

RAFL09-06-F17

RIKEN Arabidopsis Full-length cDNAs

TGAAGCGGAG AGAGAGAGAG AGACAGAGAG AGATTCAAAA ATCCGATTCC 
AGATCCATTC CTGGGCAAAC AAAGGTTGGT GTTTCTCTAA TCTCAAAGCT 
TTTTTCAAAT TCGGAAAAAG CAAATCGTGG GAAGAGATTC ATCTTCTCTC 
TGTGCGTTCA TCGGATCTCG GAGCTTTTGG TTCGTCGTCA ATGGCGGAAG 
AGACGGAGAA AAAGTACATT ACGAACGAAG ATCTTAAAAA ACACAACAAA 
TCTGGAGATC TATGGATCGC GATTCAAGGC AAGGTCTACA ACGTCTCCGA 
TTGGATTAAA ACTCATCCCG GAGGCGACAC GGTGATTCTC AATCTCGTTG 
GTCAAGACGT CACCGATGCT TTCATCGCAT TTCATCCCGG AACCGCTTGG 
CACCATCTCG ACCATCTCTT CACCGGTTAC CACATCAGAG ATTTCCAAGT 
CTCCGAAGTC TCACGCGATT ACCGTCGTAT GGCTGCCGAG TTTCGTAAAC 
TCGGTCTCTT CGAAAACAAA GGTCACGTTA CTCTCTACAC TCTAGCCTTC 
GTCGCCGCCA TGTTCCTCGG AGTTCTCTAC GGTGTTTTGG CTTGTACCTC 
CGTCTTCGCT CACCAAATCG CCGCCGCGCT TCTCGGTCTC CTCTGGATCC 
AGAGCGCTTA CATAGGTCAC GATTCTGGTC ATTACGTTAT CATGTCGAAC 
AAATCTTATA ACAGATTCGC TCAGCTTCTC TCCGGTAACT GTCTCACCGG 
AATCTCAATC GCGTGGTGGA AATGGACTCA CAATGCTCAT CATCTAGCTT 
GTAACAGCCT CGATTACGAT CCAGATCTAC AACACATCCC TGTCTTCGCC 
GTCTCCACCA AATTCTTCTC CTCATTGACC TCGAGATTCT ACGATCGGAA 
ACTCACGTTT GATCCAGTCG CGAGATTCTT AGTCAGCTAT CAACACTTTA 
CTTATTATCC AGTTATGTGC TTTGGAAGAA TCAATCTCTT CATTCAAACG 
TTTCTCTTGC TCTTCTCCAA ACGTGAAGTA CCAGATCGTG CTTTAAACTT 
CGCCGGAATC TTAGTCTTCT GGACTTGGTT CCCACTCTTA GTCTCATGTC 
TACCAAACTG GCCTGAGAGA TTCTTCTTCG TCTTCACAAG CTTCACCGTC 
ACGGCGCTTC AACACATTCA ATTCACGCTT AACCATTTCG CTGCTGATGT 
CTACGTTGGT CCACCCACCG GTAGCGACTG GTTCGAGAAG CAAGCGGCGG 
GAACAATCGA TATCTCTTGT AGATCATACA TGGATTGGTT CTTTGGTGGA 
TTACAGTTTC AGCTTGAGCA TCATTTGTTC CCTCGCTTAC CTCGTTGCCA 
TCTCCGGAAA GTTTCTCCGG TGGTTCAAGA GCTTTGCAAG AAGCATAATC 
TTCCGTATAG GAGTATGTCG TGGTTTGAAG CAAATGTGTT GACCATTAAC 
ACTTTGAAGA CAGCAGCTTA TCAAGCTAGA GACGTGGCTA ATCCGGTGGT 
TAAGAACTTG GTTTGGGAAG CTTTGAATAC TCATGGCTAA ATGATTTTAA 
TCAAAACAAA ATATGCTTTT GTTTGGGTTA AATTTGATGT GTTGTTTTTA 
TGCTTTATTG AATCTTTGAA TTTCGTTTTG TTACTTACTT ACATGGAAGA 
GATGTTTTAG ATCGAAATTG AATCGAGATT TGATTTTTTT ATTAGACAAC 
TCTTCGTATC GTAATGATTT ATTAATAATA TTATTTTGAA TTT

Gene models with high sequence identity

AT3G61580.1 [+] show detail - Fatty acid/sphingolipid desaturase
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Cytochrome b5	22.721
superfamily	Cytochrome b5	4.1e-27
HMMPanther	FATTY ACID DESATURASE 2	7.1e-152
HMMPfam	Fatty acid desaturase, type 1	7.1e-34
HMMPfam	Cytochrome b5	6.7e-23
Gene3D	Cytochrome b5	1.4e-22
HMMPIR	Fatty acid/sphingolipid desaturase	2.3e-148

See the detailed result >

AT3G61580.1

Model type: Protein coding
Short Description: Fatty acid/sphingolipid desaturase
Computational Description: Fatty acid/sphingolipid desaturase; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1 (InterPro:IPR005804), Fatty acid/sphingolipid desaturase (InterPro:IPR012171), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: Fatty acid/sphingolipid desaturase (TAIR:AT2G46210.1); Has 5416 Blast hits to 5306 proteins in 857 species: Archae - 2; Bacteria - 1062; Metazoa - 955; Fungi - 1609; Plants - 915; Viruses - 2; Other Eukaryotes - 871 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL09-06-F17 introduced

F03930 - Specific phenotypes were NOT observed.
F04443 - Specific phenotypes were NOT observed.
F05603 - rosette leaf::decreased size / cauline leaf::decreased size / stem::present in greater numbers in organism
F07846 - Specific phenotypes were NOT observed.
F14230 - Specific phenotypes were NOT observed.
F15001 - Specific phenotypes were NOT observed.
F16927 - seed::increased size
F20033 - Specific phenotypes were NOT observed.
F21332 - Specific phenotypes were NOT observed.
F21635 - Specific phenotypes were NOT observed.
F23349 - Specific phenotypes were NOT observed.
F24518 - Specific phenotypes were NOT observed.
F26304 - Specific phenotypes were NOT observed.
F30408 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

14 mutant lines found