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  3. RAFL09-06-H02

RAFL09-06-H02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05087)

full reading [+] show sequence

Nucleotide sequence: RAFL09-06-H02 - full reading 
ATCATCATCA TCATCATTCA TAACCACTTA GCCACAGATG CGATTTTCTT 
CTCCTTCTTC ATTGTGCTCT TCAACACTTA TGAACAAGAG CACCACCACC 
ACGACAACGA CGACTACAAA GACCAAAGCT TTCGTTTTGT GTTTCTGATT 
TTGATTCGAT TTTGATGCTC ATCGAAGAGA ACCCTTGATT TTGTTGCTGT 
AGTTCATAGA GATTTTACAC ATTTTGTGGA ATTTAGTGGA TTTATGATGA 
TGGGTAGGTT AGTTTTTGTA ATCTGGCTCT ATAATTGTCT CTGTTTGCTG 
CTACTCTCGA GCTTGGTTGA CGCGGATCAG GCCAACATAG ATTGCTTAAG 
GACCTTTAAA TCTCAAGTAG AGGATCCAAA TAGATATTTA TCGACTTGGG 
TTTTTGGCAA CGAGACTGCT GGTTATATCT GCAAGTTCAG TGGTGTGACT 
TGTTGGCATG ATGATGAGAA TAGGGTTTTG AGTATTAAGC TATCTGGTTA 
TGGTCTTAGA GGAGTGTTTC CTCCTGCGGT TAAGCTATGT GCTGATCTCA 
CTGGTTTAGA TCTTTCTAGA AACAACTTCT CTGGACCTTT ACCAGCCAAC 
ATTAGCACCT TGATTCCACT TGTTACGATT CTAGACCTCT CCTACAATAG 
CTTCTCTGGT GAAATCCCTA TGTTGATCTC CAACATTACC TTTTTGAACA 
CTCTTATGCT TCAGCATAAC CAGTTCACGG GTACTCTTCC TCCCCAGCTA 
GCGCAACTTG GACGGCTCAA AACATTCTCT GTGTCTGACA ATCGTCTCGT 
TGGTCCTATC CCAAATTTCA ACCAAACCTT GCAGTTTAAG CAGGAATTGT 
TTGCTAATAA CCTGGATCTG TGTGGTAAGC CTCTAGATGA CTGTAAGAGT 
GCTTCTAGCT CTCGTGGTAA AGTTGTTATT ATAGCGGCAG TTGGTGGACT 
GACTGCAGCA GCATTAGTCG TTGGGGTTGT TTTGTTCTTC TATTTCCGTA 
AATTGGGTGC TGTTCGGAAG AAGCAGGATG ATCCTGAAGG AAACAGATGG 
GCAAAGAGCT TGAAAAGACA GAAAGGTGTT AAGGTTTTCA TGTTTAAGAA 
ATCGGTTTCA AAGATGAAAT TAAGCGATCT TATGAAGGCA ACAGAGGAAT 
TCAAGAAAGA TAATATCATT GCAACAGGAA GAACAGGAAC TATGTACAAA 
GGTAGGCTTG AAGACGGGTC TCTACTTATG ATAAAGAGGT TGCAGGATTC 
TCAACGCTCT GAGAAAGAGT TTGATGCAGA GATGAAGACT TTGGGCTCTG 
TTAAAAACAG AAACTTAGTC CCTCTCTTGG GCTATTGTGT TGCCAATAAG 
GAGAGGCTTC TAATGTATGA GTACATGGCA AACGGTTACC TTTATGATCA 
GTTACATCCT GCAGATGAAG AATCCTTCAA GCCCTTGGAT TGGCCTTCAA 
GGCTGAAAAT CGCGATTGGG ACGGCAAAAG GATTGGCATG GCTTCATCAT 
AGCTGCAACC CGAGAATCAT CCATCGCAAC ATAAGCTCGA AATGCATATT 
GTTGACTGCA GAGTTTGAGC CAAAGATCTC GGATTTCGGT CTAGCTAGGC 
TGATGAACCC AATTGATACC CATTTAAGCA CATTCGTCAA TGGAGAATTT 
GGGGATTTCG GTTATGTTGC TCCCGAGTAT TCAAGAACCA TGGTTGCAAC 
TCCAAAAGGA GATGTCTACA GCTTCGGTGT TGTGCTTCTA GAGCTAGTAA 
CGGGCCAAAA AGCAACGAGT GTAACAAAAG TATCTGAAGA AAAAGCTGAG 
GAAGAAAACT TCAAGGGTAA CCTCGTGGAA TGGATTACAA AGCTATCAAG 
TGAATCAAAA CTGCAGGAAG CAATCGACAG GTCCTTACTT GGGAACGGTG 
TGGATGATGA AATCTTCAAA GTACTCAAAG TAGCATGCAA CTGCGTTCTA 
CCGGAAATAG CAAAGCAGAG GCCAACCATG TTTGAAGTTT ATCAGCTTCT 
AAGAGCCATT GGAGAGAGCT ACAACTTCAC CGCCGATGAT GATATCTTAA 
TCCCATCTGA ATCAGGTGAA GGCGATTTCA TTGAAGAGCT CATAGTTGCT 
CGTTGATCAA GAGGAAGGGT AAGAATTGTG AAACAAACAT CTCTAGTCGT 
AGCAGTCCAA AGATATATAT AATGTATAAG TATTGTTTTT ATTTTATTTT 
TGGGTTCTCG T

Gene models with high sequence identity

  1. AT5G48380.1 [+] show detail - BAK1-interacting receptor-like kinase 1
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
HMMSmart Serine/threonine-protein kinase domain 1.6e-10
HMMSmart Tyrosine-protein kinase, catalytic domain 2.3e-12
HMMPanther RECEPTOR-LIKE PROTEIN KINASE 3.1e-300
HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 3.1e-300
Gene3D no description 4.1e-32
Gene3D no description 4.1e-14
Gene3D no description 2e-41
ProfileScan Protein kinase, catalytic domain 27.637
HMMPfam Serine-threonine/tyrosine-protein kinase 6.3e-34
HMMPfam Leucine-rich repeat 0.97
HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 0.00013
superfamily Protein kinase-like domain 2.3e-65
superfamily L domain-like 1.6e-29

See the detailed result >

AT5G48380.1

Model type
Protein coding
Short Description
BAK1-interacting receptor-like kinase 1
Curator Summary
Encodes a BAK1-interacting receptor-like kinase named BIR1. Negatively regulates multiple plant resistance signaling pathways, one of which is the SOBIR1(AT2G31880)-dependent pathway.
Computational Description
BAK1-interacting receptor-like kinase 1 (BIR1); FUNCTIONS IN: protein kinase activity; INVOLVED IN: negative regulation of defense response; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G28450.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-06-H02 introduced

  • F08419 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found