1. Home
  2. Full-length cDNAs
  3. RAFL09-06-I01

RAFL09-06-I01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05091)

full reading [+] show sequence

Nucleotide sequence: RAFL09-06-I01 - full reading 
AAAAAAAACC TCTCACTGCA AAGTGCCAAC AAACAACAAG TCTTCACCTT 
CTTCTTCTTC TTCTTCTTCA AAATCTCTTG TACGCAAATA ATCCATGAGA 
AACTAGGGTT TAACTTGAGA TCTCTCTTCC GAAGTATTAC CATCAATGGC 
GACTTCTTCT TCTTCATCGT CGTCTCTGCT TTTACCAAAC ATCAATTTCA 
ACTCAAGACA ATCTCCAACA ATCACTCGTT CCGTTTCAAT CGCCGGGATC 
TTCTTACCCA GAAACCGATT AAGCTACAAT CACAATCTCC GGATTCGTAC 
GAGATTAATC AGAGCTTCTA AAGACGATAA TGTCGCTGTT GAAGATCGTG 
ATAATGCAGT GAAGATCAAC GGTGATTACA ACGGAAGTGC ACGTTTAAAC 
GGTAACGGCT CTGCGAGAAA ATCCGTCAAC GGAGATTTTA ACGGAAGTGC 
TCGTTTGAAC GGTAACGGTA GTTTGGTGAA GTATGTGAAC GGAAGTGTAA 
CGGTGGAAAC GGAGGAAGTG ACAAAGAAGA GAAAAGAAGA AGTGAGGAAG 
AAGAGAGTAG AAGATATTGG TCAAGAGGAT GCTTGGTTTA AGAACAACAC 
TCAACAAAAA CAAGTTGAGG TTTCTGTTAC ACCTGGTGGT CGATGGAATA 
GATTCAAGAC TTACTCAACT ATTCAAAGAA CATTGGAGAT TTGGGGTTTT 
GTTGTACAGT TTATTTTCAG GACTTGGTTA AGCAATAAGA AGTTCTCTTA 
TAAAGGGGGA ATGACTGAAG AGAAGAAGGT TTTAAGAAGG AAGGTTTTGG 
CTAAGTGGTT GAAAGAAAAC ATTTTGAGAT TAGGTCCTAC ATTTATCAAA 
ATTGGGCAAC AGTTCTCTAC TAGAGTGGAT ATTCTTCCTC AAGAGTATGT 
TGATCAATTG TCAGAACTTC AGGATCAAGT TCCTCCTTTC CCTTCTGCTA 
CAGCTTTATC CATTGTTGAA GAGGAGCTTG GAGGTTCTGT TGAGGACATT 
TTCGACCGTT TTGATTATGA ACCTATAGCT GCAGCTAGTC TTGGGCAAGT 
TCACCGTGCA AGACTTAAGG GTCAAGAGGT TGTCCTTAAA GTACAGAGAC 
CTGGTCTGAA GGATCTCTTT GATATTGACC TTAAGAATTT GAGGGTGATC 
GCTGAGTATC TCCAAAAGGT GGACCCAAAA TCAGATGGTG CAAAGAGAGA 
TTGGGTTGCA ATCTATGATG AATGTGCCAG TGTTTTGTAC CAGGAAATTG 
ATTACACAAA AGAAGCAGCT AATTCGGAGT TGTTTGCTAA TAACTTCAAA 
GACTTAGAGT ATGTAAAAGT TCCATCCATC TACTGGGAAT ACACTACACC 
TCAGGTCCTG ACAATGGAGT ATGTCCCTGG GATTAAGATT AACAAGATAC 
AAGCCTTAGA TCAGTTAGGT GTTGATCGAA AAAGGCTAGG AAGATATGCT 
GTTGAATCTT ACCTGGAGCA AATCTTATCT CATGGATTCT TCCACGCCGA 
CCCTCACCCT GGGAATATAG CAGTTGATGA TGTCAATGGC GGGCGGCTGA 
TATTTTACGA CTTTGGAATG ATGGGAAGTA TTAGCCCAAA TATTAGAGAA 
GGTTTGTTGG AGGCATTTTA TGGCGTCTAT GAAAAGGATC CAGATAAGGT 
CCTTCAAGCT ATGGTTCAAA TGGGAGTGCT TGTACCAACT GGAGATTTGA 
CGGCAGTTAG AAGAACAGCA TTGTTTTTTC TCAACAGTTT TGAAGAGCGG 
CTTGCTGCAC AAAGAAAGGA GAAAGAAGAA ATAGCAGCAG CAGAAGAGCT 
TGGGTTCAAG AAGCCACTAA GCAAGGAAGA AAAGCAAGAG AAAAAGAAGC 
AAAGGTTGGC TGCAATCGGA GAAGACTTAT TAGCCATTGC GGCTGATCAG 
CCTTTCCGGT TCCCCGCCAC ATTCACATTT GTTGTTAGAG CCTTTTCAGT 
ATTGGATGGC ATCGGCAAAG GTCTTGACCC CCGATTTGAT ATAACGGAGA 
TTGCTAAACC CTATGCTTTG GAATTGTTGC GGTTTCGGGA AGCTGGAGTG 
GAAGTTGTAG TAAAGGACCT GAGAAAGAGA TGGGACAGGC AATCACAAGC 
ATTCTACAAT CTATTTAGAC AAGCGGATAG AGTTGAAAAG CTAGCTGTAG 
TCATTGAACG ACTTGAGCAA GGTGATTTGA AGCTTAGGGT CCGAGCGCTA 
GAGTCTGAGA GGGCATTTCA ACGCGTTGCA GCTGTTCAAA AAACAGTAGG 
AAGTGCTGTT GCTGCAGGAA GTTTAGTCAA TCTCGCAACA ATTTTGTATC 
TGAATTCTAT AAAAACACCT GCAACTATAG CATATACAGT ATGTGCTTTC 
TTCAGCCTCC AAGTTCTAAT CGGAATCATA AAGGTTAAGA AGTTCGATCA 
ACGGGAAAAA CTAATCACTG GAACAGCTTA AGAACTTGCT TGAAGAAATG 
TATTAAAGCT TCTTCAATCT CCATAAACCC TTTTGTGCAT TTCACAGGAG 
TGTTAACAAT TTCACTGGTC TGCAAATAAA ATTATCTTAT GGAAGCTTGA 
GAGGCAAGAG ATGGTCAACT AGTCAAACCA CCACCACTCT CTCATCTCTG 
TCTTCTTAAA GTTCGATAAT AATTTTTGGA GAGGAGACTC TGGTTGTTCA 
TCAACAGAGT GGTCATGAGC CACATGTATT GCTTGTGTAT AGAGAGATTT 
AGAAATTAGG AACTTTTTCG TATAAATATA CTCATTGTAC TCAGCTACTC 
ACTAGACTCA TCTCTGTTTT AGTAATATTT TGAATACTGT ATCTCAAATA 
AATTAATCTT AT

Gene models with high sequence identity

  1. AT5G64940.1 [+] show detail - ABC2 homolog 13
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
HMMPfam ABC-1 5.8e-37
superfamily Protein kinase-like domain 5.7e-22
HMMPanther UBIQUINONE BIOSYNTHESIS PROTEIN AARF(E.COLI)/ 1.1e-200
HMMPanther CHAPERONE-ACTIVITY OF BC1 COMPLEX (CABC1)-REL 1.1e-200

See the detailed result >

AT5G64940.1

Model type
Protein coding
Short Description
ABC2 homolog 13
Curator Summary
Encodes a member of ATH subfamily of ATP-binding cassette (ABC) proteins.
Computational Description
ABC2 homolog 13 (ATH13); FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G07700.2); Has 10051 Blast hits to 9997 proteins in 1795 species: Archae - 126; Bacteria - 4380; Metazoa - 442; Fungi - 487; Plants - 725; Viruses - 14; Other Eukaryotes - 3877 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-06-I01 introduced

  • F21235 - Specific phenotypes were NOT observed.
  • F22746 - seed::increased size / seed::increased length
  • F26111 - Specific phenotypes were NOT observed.
  • F26947 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found