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  3. RAFL09-06-M15

RAFL09-06-M15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05111)

full reading [+] show sequence

Nucleotide sequence: RAFL09-06-M15 - full reading 
AAAAAAAACT AGAAAGATCC GGTGATTATT TCATCATCGG CGATTATGGA 
ATTATTCGCA TTGTTAATTA AGGTCGCCGG ACTTTTGGCC ACTGTCACCG 
TTGGAGCCAA CGTAGTTTCC TACTCTCGTT TCCGTCGCCA GAATCTCGCG 
AAGTTTCGCT CTCCAATCGA CGAATCTAAA GAAGTTCTCG CTGATTTCAA 
TTCCATTGAA CACGAGGAAG GAAAATTCTT CTTTGGGTTA GCTACTGCAC 
CTGCTCATGC GGAGGATGAT TTAGATGATG CTTGGCTCCA GTTTGCTAAA 
GAAACACCAT GTTCAGCAGA AGAAGCAGAG GCTGCTGATA AGAAAGCTAG 
GAGGAAGAAG GTTAAGCTTG CTGTGGGAGC TATAACCAAA GGCTTGGCCA 
AGAACACTCA TGGCAAAGAA GATAAGAATG CAGCTGATAA GCCACCCTCT 
AAAAATGTTG CCGCGTGGCA TAACGCTCCT CACGCGGAGG ACAGGCTTAA 
ATTTTGGTCA GATCCTGACA AAGAAGTGAA GCTAGCCAAA GATACTGGCG 
TTACTGTCTT TAGGATGGGA GTCGATTGGT CTAGGATCAT GCCAGTTGAG 
CCCACCAAAG GAATTAAGGA AGCAGTTAAC TATGAGGCTG TCGAACACTA 
TAAATGGATA CTTAAAAAAG TTCGTTCAAA TGGAATGAAG GTGATGCTAA 
CGCTGTTTCA TCATTCATTG CCACCATGGG CAGCTGACTA TGGTGGCTGG 
AAAATGGAGA AGACAGTCGA CTACTTTATG GACTTTACCA GGATTGTTGT 
GGATTCCATG TATGATTTGG TAGACTCTTG GGTAACATTT AATGAACCCC 
ATATCTTCAC CATGCTTACC TACATGTGTG GATCTTGGCC CGGTAACAAC 
CCTGATTTTC TGGAGATAGC TACATCTACT CTACCAATGG GTGTATTCCA 
TCGAGCCTTA CACTGGATGG CTGTTGCTCA CTCAAAGGCC TATGACTACA 
TCCATGGGAA AATTTCTTTG AAAAAACCTT TGGTAGGGGT TGCGCACCAC 
GTCTCCTTTA TGCGACCATA TGGGCTCTTT GATATCGGGG CTGTTACCAT 
TAGTAATTCC CTCACTATAT TTCCATATAT CGATAGCATT TGTGAGAAGT 
TGGATTTCAT AGGCATCAAC TACTACGGAC AGGAAGCAGT GTGTGGTGCT 
GGACTAAAGC TTGTAGAGAC TGATGAATAC AGTGAATCGG GAAGAGGGGT 
ATATCCTGAT GGTCTCTACC GCGTGTTGTT GATGTTCCAC GAGAGATACA 
AACACCTGAA AGTTCCTTTT ATCGTCACAG AAAATGGCGT GTCTGATGAA 
ACAGATGTGA TTCGACGACC TTACCTGATC GAGCATCTCC TTGCCTTATA 
TGCTGCAATG CTAAAGGGTG TTCCTGTGCT CGGTTACATA TTCTGGACTA 
TTTCGGACAA TTGGGAATGG GCTGATGGAT ATGGTCCAAA ATTTGGACTT 
GTTGCGGTTG ACCGATCCCA TGATCTTGCC CGAACTCTTC GGCAATCATA 
CCATCTCTTT TCCAAGATAG TTAAAAGTGG AAAAGTCACT CGGAAAGATC 
GGTCTCTTGC ATGGAACGAA CTCCAAAAAG CTGCCAAAGC AGGAAAACTA 
CGGCCATTCT ACCGAGGCGT TGATAATCAT AATCTTATGT ACGCAGATGG 
TCTCGACAAG CCTCAATGGA GACCGTTTGT TGACCGCGAC TGGCGGTTTG 
GTCACTACCA AATGGATGGT CTTCAAGACC CGTTGAGTCG CGTGGCTCGA 
ACCCTTCTCA TATGGCCGCT TATCATGAAA AAGAGGATAA GAAAAGTTAA 
GATCAAGCAC ACCGATGATG CTGGGCTTGT TCTACATCCT GCTTTAGCCT 
CACCCTTTGA CTAGAGAAAG AGGTAGAAGA AATCCGAGTG TACAAACTCA 
TTTCCCTGTA TGATTTGCCA AACCTTTGGG CCTTTGGCGC CATTAGAGAC 
GATTCACCGT TTTGTTGTTA ATGTTTAAAT AAAGGCAAAA CGGCATGATG 
TTCGGAT

Gene models with high sequence identity

  1. AT3G06510.1 [+] show detail - Glycosyl hydrolase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Glycoside hydrolase, catalytic core 6.3e-101
Gene3D Glycoside hydrolase, subgroup, catalytic core 9.4e-89
FPrintScan Glycoside hydrolase, family 1 5.2e-14
FPrintScan Glycoside hydrolase, family 1 5.2e-14
FPrintScan Glycoside hydrolase, family 1 5.2e-14
FPrintScan Glycoside hydrolase, family 1 5.2e-14
FPrintScan Glycoside hydrolase, family 1 5.2e-14
HMMPanther BETA-GLUCOSIDASE-RELATED 0
HMMPanther Glycoside hydrolase, family 1 0
PatternScan Glycoside hydrolase, family 1, active site 0
HMMPfam Glycoside hydrolase, family 1 2.2e-32
HMMPfam Glycoside hydrolase, family 1 1.3e-24

See the detailed result >

AT3G06510.1

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Curator Summary
Encodes a protein with beta-glucosidase activity, mutants show increased sensitivity to freezing
Computational Description
SENSITIVE TO FREEZING 2 (SFR2); FUNCTIONS IN: beta-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to freezing; LOCATED IN: chloroplast outer membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 27 (TAIR:AT3G60120.1); Has 11582 Blast hits to 10595 proteins in 1458 species: Archae - 144; Bacteria - 8179; Metazoa - 842; Fungi - 193; Plants - 1310; Viruses - 0; Other Eukaryotes - 914 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-06-M15 introduced

  • F07022 - Specific phenotypes were NOT observed.
  • F16838 - Specific phenotypes were NOT observed.
  • F17311 - seed::increased size / seed::increased length
  • F17903 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found