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  3. RAFL09-06-N12

RAFL09-06-N12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05119)

full reading [+] show sequence

Nucleotide sequence: RAFL09-06-N12 - full reading 
ATCACACAGA TCCACACATC AAGAAACTAT TCAAAAATGG CTTTGCTTGT 
AGAGAAAACC TCAAGTGGCC GTGAATACAA GGTCAAGGAC ATGTCCCAAG 
CCGACTTCGG CCGTCTCGAA ATCGAGCTAG CCGAAGTCGA AATGCCTGGA 
CTTGTCTCTT GCGTTACCGA ATTCGGACCA TCTCAGCCAC TCAAAGGAGC 
AAGAATCACC GGTTCTCTCC ACATGACGAT CCAAACCGCG GTTTTAATCG 
AAACCTTAAC CGCTCTCGGC GCTGAAGTCA GATGGTGTTC TTGCAACATC 
TTCTCCACTC AAGACCACGC CGCGGCCGCT ATTGCTCGTG ATTCCGCCGC 
GGTGTTCGCT TGGAAAGGTG AGACTCTTCA AGAATATTGG TGGTGTACAG 
AGAGAGCTCT TGACTGGGGT CCTGGAGGTG GTCCTGATCT CATCGTTGAT 
GACGGTGGTG ATGCTACACT GTTGATCCAT GAAGGAGTTA AAGCTGAAGA 
GATCTTTGCC AAGAATGGTA CGTTCCCTGA CCCGACCTCT ACTGATAATC 
CCGAGTTTCA GATCGTCCTG TCTATTATCA AAGACGGTCT TCAAGTTGAT 
CCCAAGAAGT ACCATAAGAT GAAGGAGAGA TTGGTTGGTG TCTCTGAGGA 
GACTACTACT GGTGTTAAGA GGCTTTATCA GATGCAGGAG ACTGGAGCTC 
TCTTGTTCCC TGCCATTAAC GTCAATGACT CTGTCACCAA GAGCAAGTTT 
GACAACTTGT ACGGATGCCG ACACTCGCTT CCCGATGGTC TCATGAGGGC 
TACTGATGTT ATGATTGCTG GAAAGGTTGC TGTTATCTGT GGTTATGGTG 
ATGTAGGAAA AGGTTGTGCT GCAGCAATGA AAACCGCGGG TGCTCGTGTC 
ATAGTGACTG AGATTGATCC AATCTGTGCT CTTCAGGCTC TTATGGAAGG 
TCTTCAAGTT CTGACCCTTG AGGATGTTGT CTCAGAAGCT GATATCTTCT 
GTACCACTAC TGGTAACAAA GATATTATTA TGGTTGATCA CATGAGGAAG 
ATGAAGAACA ATGCCATTGT CTGTAACATT GGTCATTTTG ACAATGAAAT 
CGACATGCTT GGACTTGAGA CCTACCCTGG TGTGAAACGT ATTACCATCA 
AGCCACAGAC CGATAGGTGG GTGTTTCCTG ATACCAACTC TGGCATCATT 
GTTCTAGCTG AAGGTCGTTT GATGAACTTG GGATGCGCCA CTGGACACCC 
GAGTTTCGTG ATGTCGTGCT CATTCACCAA CCAGGTGATT GCACAGCTTG 
AGCTCTGGAA CGAGAAGTCA AGCGGGAAGT ATGAGAAGAA GGTCTATGTT 
TTGCCTAAAC ACTTGGATGA GAAGGTAGCT GCACTTCACT TAGGCAAGCT 
TGGTGCAAGA CTCACCAAGC TTACCAAGGA CCAATCTGAC TATGTCAGCA 
TACCCGTTGA AGGTCCTTAC AAGCCTGTTC ACTACAGGTA CTGAGAGGAT 
AAAAGAGCCA AGCTTTGGTT CTTCGTTTGG TTTTCTGATT AAGCCGTTTA 
TTGGCAATTG TTTGAGTCGG ATTGGGTCTG GTTTGGTCGG AGAAATATGA 
GATATTGGTC TTCTGATGCG TGTGACCAAA TATTGGTATG AATAAGGGGT 
TGTTTTTGAT TTATGAGAGG CTGTTTTTTT GTTTTCTTCT TCTTCTATTT 
TATATATCTT CAACATAAAT TAGCTTATGC TTTACACT

Gene models with high sequence identity

  1. AT3G23810.1 [+] show detail - S-adenosyl-l-homocysteine (SAH) hydrolase 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam S-adenosyl-L-homocysteine hydrolase 1.9e-141
HMMPfam S-adenosyl-L-homocysteine hydrolase, NAD binding 3.7e-83
HMMTigr S-adenosyl-L-homocysteine hydrolase 4.6e-236
PatternScan S-adenosyl-L-homocysteine hydrolase, conserved site 0
PatternScan S-adenosyl-L-homocysteine hydrolase, conserved site 0
HMMPIR S-adenosyl-L-homocysteine hydrolase 2e-252
Gene3D no description 1.5e-132
superfamily Formate/glycerate dehydrogenase catalytic dom 5.6e-113
superfamily NAD(P)-binding domain 4.2e-46
HMMPanther S-adenosyl-L-homocysteine hydrolase 0

See the detailed result >

AT3G23810.1

Model type
Protein coding
Short Description
S-adenosyl-l-homocysteine (SAH) hydrolase 2
Computational Description
S-adenosyl-l-homocysteine (SAH) hydrolase 2 (SAHH2); FUNCTIONS IN: adenosylhomocysteinase activity; INVOLVED IN: one-carbon metabolic process; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosyl-L-homocysteine hydrolase (InterPro:IPR000043), S-adenosyl-L-homocysteine hydrolase, conserved site (InterPro:IPR020082), S-adenosyl-L-homocysteine hydrolase, NAD binding (InterPro:IPR015878); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-homocysteine hydrolase (TAIR:AT4G13940.1); Has 7939 Blast hits to 7933 proteins in 1466 species: Archae - 229; Bacteria - 2315; Metazoa - 640; Fungi - 145; Plants - 247; Viruses - 0; Other Eukaryotes - 4363 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-06-N12 introduced

  • F08739 - seed::increased size / seed::increased length
  • F15332 - seed::increased length

Mutant lines with disrupted or induced

3 mutant lines found