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RAFL09-06-O11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05124)

full reading [+] show sequence

Nucleotide sequence: RAFL09-06-O11 - full reading 
AGGTACAAGA GCCTTACAAA ATTCTTCTGG TTCTCTGAGG ATCAAACCAC 
CACAAGTCAG AACAGAGTGA GGTAATCATT ACCAACAAAA AATGGCGGCT 
TTATCATCCT CCTCTCTGTT TTTCTCTTCC AAGACAACTT CTCCGATCAG 
CAATCTCCTG ATCCCGCCAT CTCTCCACCG CTTCTCTCTA CCCTCTTCAT 
CTTCCTCCTT TTCCTCTCTC TCTTCTTCTT CTTCTTCTTC TTCTTCTCTC 
TTGACATTCT CTCTGAGGAC TTCTCGAAGG TTATCTCCTC AAAAATTTAC 
CGTTAAGGCC AGCTCCGTCG GTGAGAAGAA GAATGTACTT ATAGTCAACA 
CCAACAGTGG CGGTCACGCC GTGATCGGGT TTTACTTCGC CAAAGAGCTT 
CTCTCCGCCG GCCACGCCGT CACCATCTTG ACCGTCGGCG ATGAATCTTC 
CGAAAAGATG AAGAAACCTC CTTTCAACCG ATTCTCCGAA ATTGTTAGCG 
GCGGAGGAAA GACGGTGTGG GGGAACCCGG CCAATGTTGC CAATGTGGTC 
GGAGGTGAAA CATTTGACGT TGTCCTTGAC AACAATGGCA AGGATTTGGA 
TACTGTTAGG CCAGTGGTGG ATTGGGCTAA AAGCTCCGGC GTCAAGCAAT 
TCTTGTTCAT AAGTAGCGCC GGGATCTACA AGTCCACCGA ACAACCTCCT 
CACGTTGAAG GGGACGCAGT TAAAGCCGAC GCTGGTCACG TGGTGGTGGA 
GAAGTACTTA GCCGAAACAT TCGGGAACTG GGCCTCCTTT CGACCGCAGT 
ACATGATCGG CTCTGGCAAC AACAAAGACT GCGAAGAATG GTTCTTCGAC 
CGGATTGTGA GGGACAGAGC AGTGCCAATC CCAGGATCAG GATTGCAGCT 
AACCAACATA TCCCACGTGA GGGACTTGTC TTCCATGCTT ACTTCTGCCG 
TTGCCAACCC AGAGGCTGCT TCCGGCAACA TCTTCAACTG CGTTAGCGAC 
AGAGCCGTTA CTCTTGACGG TATGGCCAAG CTCTGTGCTG CCGCTGCTGG 
CAAAACTGTT GAGATCGTTC ATTATGACCC TAAAGCCATT GGGGTTGACG 
CCAAGAAGGC TTTTCTATTC AGAAACATGC ATTTCTACGC AGAGCCAAGA 
GCCGCTAAGG ACTTATTAGG GTGGGAGAGT AAAACGAATC TGCCTGAAGA 
TCTCAAGGAG AGATTCGAAG AGTATGTGAA GATTGGCAGA GACAAGAAAG 
AGATTAAGTT TGAGTTAGAC GATAAGATAC TCGAAGCCCT CAAAACTCCA 
GTGGCCGCTT GATCAAATAC GCCATAAAGT TTGTTCTTCA TTTGTAACTT 
CTTATGCTAC ACTGTGCTCT TTCATTTCCC ACGGCTCATA TGAGATGAAC 
ATGATTTCAG CTAAAAGATC ATTTAAATAT C

Gene models with high sequence identity

  1. AT3G63140.1 [+] show detail - chloroplast stem-loop binding protein of 41 kDa
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D NAD(P)-binding domain 0.0000000034
HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 4.8e-88
HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 4.8e-88
HMMPfam NAD-dependent epimerase/dehydratase 0.00000059
superfamily NAD(P)-binding domain 3.1e-33
Coil coiled-coil 0

See the detailed result >

AT3G63140.1

Model type
Protein coding
Short Description
chloroplast stem-loop binding protein of 41 kDa
Curator Summary
Encodes a protein with ribonuclease activity that is involved in plastid rRNA maturation.
Computational Description
chloroplast stem-loop binding protein of 41 kDa (CSP41A); FUNCTIONS IN: mRNA binding, poly(U) RNA binding; INVOLVED IN: rRNA processing; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: chloroplast RNA binding (TAIR:AT1G09340.1); Has 1047 Blast hits to 1047 proteins in 372 species: Archae - 70; Bacteria - 649; Metazoa - 6; Fungi - 5; Plants - 106; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-06-O11 introduced

  • F09634 - rosette leaf::dark green / stem internode::decreased length
  • F19946 - stem::increased thickness / stem::abnormal / rosette leaf::decreased size / rosette leaf::increased width / stem::abnormal
  • F25202 - Specific phenotypes were NOT observed.
  • F25930 - Specific phenotypes were NOT observed.
  • F28223 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found