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  3. RAFL09-07-D04

RAFL09-07-D04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05145)

full reading [+] show sequence

Nucleotide sequence: RAFL09-07-D04 - full reading 
GCGGTGGTGA GAAACAATGG TGAAGTTTCT GAAGCAGAAC AAAGCGGTGA 
TCCTCCTTCA AGGCCGTTAC GCCGGCAAAA AGGCAGTGAT CATCAAATCC 
TTCGATGACG GAACCAGTGA CCGTCGTTAC GGACACTGCC TCGTCGCCGG 
ACTGAAGAAG TACCCGAGCA AAGTCATCCG CAAAGACTCA GCGAAGAAGA 
CGGCGAAGAA ATCAAGAGTG AAATGTTTCA TCAAGCTCGT GAATTACCAG 
CATCTGATGC CTACACGTTA CACGCTCGAT GTAGATCTGA AGGAAGTAGC 
GACTCTTGAT GCTCTTAAGA GTAAGGATAA GAAGGTGACT GCTTTAAAGG 
AAGCTAAGGC TAAGCTTGAG GAACGTTTCA AGACTGGGAA GAACAGGTGG 
TTCTTTACTA AGCTCAGGTT CTGAAGAAGA ACCTTTGAGA TTTTTATCTA 
TCTATCTACT TTTTGTTTAG TTCTAGAATG AATTTGGATC ATTGTTTAAG 
ACCTTTTGGT TTGGAATTGA TTCTGGATTT TGTCTCTTAC TTATAATCTT 
TTGCTATATT GATGCCC

Gene models with high sequence identity

  1. AT3G22230.1 [+] show detail - Ribosomal L27e protein family
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Ribosomal protein L27e, conserved site 0
HMMPanther Ribosomal protein L27e 7.4e-79
BlastProDom Ribosomal protein L27e 4e-37
HMMPfam Ribosomal protein L27e 8.8e-33
Coil coiled-coil 0

See the detailed result >

AT3G22230.1

Model type
Protein coding
Short Description
Ribosomal L27e protein family
Computational Description
Ribosomal L27e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27e, conserved site (InterPro:IPR018262), Ribosomal protein L27e (InterPro:IPR001141); BEST Arabidopsis thaliana protein match is: Ribosomal L27e protein family (TAIR:AT4G15000.1); Has 765 Blast hits to 765 proteins in 292 species: Archae - 0; Bacteria - 0; Metazoa - 342; Fungi - 149; Plants - 139; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-07-D04 introduced

  • F03718 - Specific phenotypes were NOT observed.
  • F03739 - Specific phenotypes were NOT observed.
  • F13634 - Specific phenotypes were NOT observed.
  • F16425 - Specific phenotypes were NOT observed.
  • F20024 - seed::increased size / seed::increased length
  • F25050 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found