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RAFL09-07-E08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05157)

full reading [+] show sequence

Nucleotide sequence: RAFL09-07-E08 - full reading 
AAACTCTTTG ATTAGCTCAT AAATACTAAA CCAGTTGACC ATTTTTTTCT 
GATAAACAAT CAATGGCAAG GTCACCTTGT TGCGAGAAGA ACGGACTCAA 
GAAAGGGCCT TGGACATTTG AAGAAGACCA GAAGCTTGTT GACTATATCC 
AGAAACATGG TTATGGTAAC TGGAGAACCC TCCCCAAAAA TGCCGGTTTG 
CAAAGATGTG GCAAAAGTTG TAGGTTAAGG TGGACTAATT ATCTCCGACC 
AGATATAAAG CGAGGAAGGT TCTCTTTTGA GGAAGAAGAA ACCATTATTC 
AGCTTCATAG CTTCTTAGGA AACAAGTGGT CTGCGATTGC GGCGCGTTTA 
CCAGGAAGAA CAGATAATGA GATCAAGAAC TTTTGGAACA CTCATATAAG 
AAAGAAGCTA CTTAGAATGG GGATTGATCC AGTGACTCAC AGTCCACGAC 
TCGATCTCCT CGATATCTCA TCCATCTTAG CTTCATCTCT ATACAATTCA 
TCTTCACATC ACATGAACAT GTCAAGACTC ATGATGGATA CTAATCGTCG 
TCATCACCAG CAACATCCAT TGGTTAACCC CGAGATACTC AAGCTCGCTA 
CCTCTCTCTT CTCTCAAAAT CAAAACCAAA ACCTTGTGGT GGATCATGAC 
TCGAGAACTC AAGAGAAGCA AACAGTTTAT AGCCAAACCG GAGTAAACCA 
ATACCAAACC AACCAATATT TCGAGAACAC GATTACTCAA GAACTCCAAT 
CTTCCATGCC ACCATTCCCC AATGAAGCTC GTCAGTTTAA CAACATGGAT 
CATCACTTCA ATGGTTTTGG AGAACAAAAT CTTGTTTCAA CTTCTACTAC 
GTCAGTCCAA GATTGCTATA ATCCGTCATT CAACGATTAT TCAAGTTCAA 
ATTTTGTCTT GGATCCTTCT TATTCGGATC AGAGCTTCAA CTTCGCAAAT 
TCGGTCTTAA ACACGCCATC CTCGAGCCCG AGCCCGACTA CGTTAAACTC 
GAGTTACATC AATAGTAGCA GTTGCAGCAC TGAGGATGAA ATAGAAAGCT 
ATTGCAGTAA TCTCATGAAG TTTGATATTC CCGATTTCTT GGACGTTAAT 
GGTTTTATTA TATAATTCCA AGAAACAAAA TAAAACTCGA GTGGGATACA 
GTTTTCTTTT TATTCTTTGT TGTAATCTTA AGACTTTTTT TTTTTTGTTT 
TTCCGATTTG TTTACTTGTA AAATACTGTT TTCGTTTTGT TGTTAATTTG 
TTATATTTCT CTAGAGTTTA TAGCTAATAC CATTTTTAAA ATT

Gene models with high sequence identity

  1. AT4G21440.1 [+] show detail - MYB-like 102
    E-value: 0; Score: 99.69

 

InterPro Scan Digest

Program Description E-value
superfamily Homeodomain-like 3.1e-23
superfamily Homeodomain-like 0.0000000000042
HMMPfam Myb, DNA-binding 8.7e-16
HMMPfam Myb, DNA-binding 0.00000000000005
HMMPanther R2R3-MYB TRANSCRIPTION FACTOR 2.4e-138
HMMPanther Myb transcription factor 2.4e-138
ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 24.029
ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 17.4
HMMSmart SANT, DNA-binding 0.00000000000041
HMMSmart SANT, DNA-binding 0.0000000000000014
Gene3D Homeodomain-related 1.4e-16
Gene3D Homeodomain-related 3.2e-17

See the detailed result >

AT4G21440.1

Model type
Protein coding
Short Description
MYB-like 102
Curator Summary
Encodes a MYB transcription factor involved in wounding and osmotic stress response. Member of the R2R3 factor gene family.
Computational Description
MYB-like 102 (MYB102); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 74 (TAIR:AT4G05100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-07-E08 introduced

  • F22220 - rosette leaf::increased size / rosette leaf::variegated / rosette leaf::desaturated green / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / cauline leaf::decreased size / stem::abnormal

Mutant lines with disrupted or induced

2 mutant lines found