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  3. RAFL09-07-E15

RAFL09-07-E15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09629)

full reading [+] show sequence

Nucleotide sequence: RAFL09-07-E15 - full reading
AAAAAAAACA CAAACATCAC ATGTATACAC ACATATAGTT ACAAACACAC 
ATACACAAAA CACAGATATA TAAAAATGTC TTGTTATAAT AAAGCACTAT
TGATCGGCAA CAAAGTCGTC GTTATACTTG TATTCCTCTT ATGTTTGGTT
CACTCGTCAG AGTCACTTCG ACCACTGTTT GCATGTGATC CAGCAAACGG
GTTAACCCGG ACGCTCCGGT TCTGTCGGGC CAATGTACCG ATCCATGTGA
GAGTTCAAGA TTTGCTCGGA AGGCTCACGT TGCAGGAGAA GATCCGCAAC
CTCGTCAACA ATGCTGCCGC CGTACCACGT CTCGGTATTG GAGGCTATGA
GTGGTGGTCC GAGGCTCTCC ACGGCATTTC CGACGTTGGT CCAGGCGCTA
AGTTCGGTGG TGCTTTTCCC GGTGCCACCA GCTTCCCTCA GGTCATCACC
ACCGCAGCTT CTTTCAACCA GTCTCTATGG GAAGAGATCG GACGGGTGGT
GTCTGATGAG GCAAGAGCTA TGTACAATGG TGGCGTGGCC GGTCTGACAT
ATTGGAGTCC GAATGTGAAT ATCTTGAGGG ACCCGCGGTG GGGCCGAGGC
CAAGAAACTC CCGGAGAAGA TCCTATCGTT GCCGCAAAAT ATGCCGCCAG
CTACGTCCGG GGACTTCAGG GTACTGCTGC CGGTAACCGC CTTAAAGTCG
CCGCATGTTG CAAACATTAC ACTGCTTATG ATCTTGATAA TTGGAATGGC
GTCGACCGTT TCCACTTCAA CGCTAAGGTC ACCCAACAAG ATTTAGAGGA
CACATACAAC GTGCCATTCA AATCATGTGT TTACGAAGGA AAAGTAGCGA
GTGTAATGTG TTCGTACAAC CAAGTCAATG GAAAGCCCAC ATGTGCTGAT
GAAAATCTCT TAAAGAACAC TATTCGTGGT CAATGGCGTC TCAATGGGTA
CATTGTCTCA GATTGTGACT CTGTTGATGT TTTCTTCAAC CAACAACATT
ACACTAGCAC TCCGGAAGAA GCCGCCGCCA GATCCATTAA AGCCGGTTTG
GACTTGGACT GCGGGCCGTT TTTGGCGATT TTCACGGAAG GTGCAGTGAA
GAAAGGATTG TTAACGGAGA ATGACATCAA TTTAGCACTT GCTAATACAT
TAACAGTCCA AATGAGACTT GGTATGTTTG ATGGTAACCT TGGGCCGTAC
GCTAATCTTG GGCCAAGAGA TGTTTGTACT CCGGCCCATA AACATTTAGC
TCTTGAAGCA GCCCATCAAG GGATTGTTCT TCTCAAAAAC TCTGCTCGCT
CTCTTCCACT CTCCCCCAGA CGCCACCGCA CCGTCGCCGT GATTGGTCCA
AACTCCGACG TCACTGAGAC TATGATCGGC AACTATGCAG GGAAAGCATG
CGCCTATACG TCGCCGTTGC AAGGGATTTC AAGATACGCG AGGACACTTC
ACCAAGCTGG CTGTGCCGGC GTGGCTTGCA AAGGGAACCA AGGATTTGGT
GCAGCGGAGG CAGCGGCGCG TGAAGCCGAC GCGACGGTTC TTGTGATGGG
ATTAGATCAG TCGATAGAGG CAGAGACACG AGATCGAACC GGGCTTCTCT
TACCGGGTTA TCAACAAGAC CTAGTGACCC GTGTAGCTCA AGCTTCTAGA
GGTCCAGTCA TTTTGGTCCT TATGAGTGGT GGACCAATCG ATGTAACCTT
CGCTAAGAAT GATCCTCGTG TTGCTGCCAT CATTTGGGCT GGGTATCCGG
GTCAAGCGGG TGGAGCTGCC ATCGCCAATA TCATCTTTGG TGCTGCTAAT
CCCGGAGGAA AACTACCAAT GACATGGTAT CCACAAGATT ACGTGGCCAA
AGTGCCAATG ACGGTAATGG CCATGAGAGC ATCCGGTAAT TATCCAGGAA
GGACATACAG ATTCTACAAA GGTCCAGTAG TATTTCCATT TGGGTTCGGT
TTAAGTTACA CTACCTTCAC TCATAGTTTG GCCAAAAGCC CATTGGCCCA
ACTATCAGTT TCACTCTCCA ATCTCAACTC TGCCAATACC ATTCTCAACT
CTTCATCACA CTCCATCAAA GTGTCTCACA CCAACTGCAA TTCATTTCCG
AAAATGCCCC TTCACGTCGA AGTATCAAAC ACAGGTGAAT TCGATGGAAC
ACACACGGTG TTTGTATTTG CTGAGCCGCC GATAAACGGA ATAAAAGGAT
TGGGTGTGAA CAAACAATTG ATAGCGTTCG AGAAGGTTCA TGTCATGGCA
GGGGCAAAAC AGACCGTTCA AGTTGATGTT GATGCTTGCA AGCATCTTGG
TGTAGTGGAT GAGTATGGAA AGAGGAGAAT CCCAATGGGT GAGCATAAGC
TGCACATTGG TGACCTTAAA CATACTATTT TGGTCCAACC GCAACTTTGA
CGGACGCATA AAAAAACCAA CAAATAAGGA AAGCATTTTA ACAAAGTGGA
GTGTTTCCTC TTATTTATAT AATATAGAGA GATAGGTTTA TTTTCTTATG
AAATTATTAC TCAAGAAAGT ATGAATTTGT AAAGAACCAC CAAAGGGTTG
CTTCTTGGTT GTGTCTTTTT TCCTTTAATT TTTTTTTGGA C

Gene models with high sequence identity

  1. AT5G49360.1 [+] show detail - beta-xylosidase 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Glycoside hydrolase, family 3, N-terminal 3.8e-06
FPrintScan Glycoside hydrolase, family 3, N-terminal 3.8e-06
FPrintScan Glycoside hydrolase, family 3, N-terminal 3.8e-06
HMMPfam Glycoside hydrolase, family 3, N-terminal 3.6e-55
HMMPfam Glycoside hydrolase, family 3, C-terminal 1.7e-52
superfamily Glycoside hydrolase, catalytic core 1.4e-97
superfamily Glycoside hydrolase, family 3, C-terminal 2.3e-30
Gene3D Glycoside hydrolase, family 3, N-terminal 9.8e-85
Gene3D no description 4.3e-52

See the detailed result >

AT5G49360.1

Model type
Protein coding
Short Description
beta-xylosidase 1
Curator Summary
Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members.
Computational Description
beta-xylosidase 1 (BXL1); FUNCTIONS IN: alpha-N-arabinofuranosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: seed coat development; LOCATED IN: apoplast, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-xylosidase 2 (TAIR:AT1G02640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-07-E15 introduced

  • F00525 - Specific phenotypes were NOT observed.
  • F09247 - Specific phenotypes were NOT observed.
  • F19631 - Specific phenotypes were NOT observed.
  • F20232 - Specific phenotypes were NOT observed.
  • F26806 - Specific phenotypes were NOT observed.
  • F27433 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found