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  3. RAFL09-07-E15

RAFL09-07-E15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09629)

full reading [+] show sequence

Nucleotide sequence: RAFL09-07-E15 - full reading 
AAAAAAAACA CAAACATCAC ATGTATACAC ACATATAGTT ACAAACACAC 
ATACACAAAA CACAGATATA TAAAAATGTC TTGTTATAAT AAAGCACTAT 
TGATCGGCAA CAAAGTCGTC GTTATACTTG TATTCCTCTT ATGTTTGGTT 
CACTCGTCAG AGTCACTTCG ACCACTGTTT GCATGTGATC CAGCAAACGG 
GTTAACCCGG ACGCTCCGGT TCTGTCGGGC CAATGTACCG ATCCATGTGA 
GAGTTCAAGA TTTGCTCGGA AGGCTCACGT TGCAGGAGAA GATCCGCAAC 
CTCGTCAACA ATGCTGCCGC CGTACCACGT CTCGGTATTG GAGGCTATGA 
GTGGTGGTCC GAGGCTCTCC ACGGCATTTC CGACGTTGGT CCAGGCGCTA 
AGTTCGGTGG TGCTTTTCCC GGTGCCACCA GCTTCCCTCA GGTCATCACC 
ACCGCAGCTT CTTTCAACCA GTCTCTATGG GAAGAGATCG GACGGGTGGT 
GTCTGATGAG GCAAGAGCTA TGTACAATGG TGGCGTGGCC GGTCTGACAT 
ATTGGAGTCC GAATGTGAAT ATCTTGAGGG ACCCGCGGTG GGGCCGAGGC 
CAAGAAACTC CCGGAGAAGA TCCTATCGTT GCCGCAAAAT ATGCCGCCAG 
CTACGTCCGG GGACTTCAGG GTACTGCTGC CGGTAACCGC CTTAAAGTCG 
CCGCATGTTG CAAACATTAC ACTGCTTATG ATCTTGATAA TTGGAATGGC 
GTCGACCGTT TCCACTTCAA CGCTAAGGTC ACCCAACAAG ATTTAGAGGA 
CACATACAAC GTGCCATTCA AATCATGTGT TTACGAAGGA AAAGTAGCGA 
GTGTAATGTG TTCGTACAAC CAAGTCAATG GAAAGCCCAC ATGTGCTGAT 
GAAAATCTCT TAAAGAACAC TATTCGTGGT CAATGGCGTC TCAATGGGTA 
CATTGTCTCA GATTGTGACT CTGTTGATGT TTTCTTCAAC CAACAACATT 
ACACTAGCAC TCCGGAAGAA GCCGCCGCCA GATCCATTAA AGCCGGTTTG 
GACTTGGACT GCGGGCCGTT TTTGGCGATT TTCACGGAAG GTGCAGTGAA 
GAAAGGATTG TTAACGGAGA ATGACATCAA TTTAGCACTT GCTAATACAT 
TAACAGTCCA AATGAGACTT GGTATGTTTG ATGGTAACCT TGGGCCGTAC 
GCTAATCTTG GGCCAAGAGA TGTTTGTACT CCGGCCCATA AACATTTAGC 
TCTTGAAGCA GCCCATCAAG GGATTGTTCT TCTCAAAAAC TCTGCTCGCT 
CTCTTCCACT CTCCCCCAGA CGCCACCGCA CCGTCGCCGT GATTGGTCCA 
AACTCCGACG TCACTGAGAC TATGATCGGC AACTATGCAG GGAAAGCATG 
CGCCTATACG TCGCCGTTGC AAGGGATTTC AAGATACGCG AGGACACTTC 
ACCAAGCTGG CTGTGCCGGC GTGGCTTGCA AAGGGAACCA AGGATTTGGT 
GCAGCGGAGG CAGCGGCGCG TGAAGCCGAC GCGACGGTTC TTGTGATGGG 
ATTAGATCAG TCGATAGAGG CAGAGACACG AGATCGAACC GGGCTTCTCT 
TACCGGGTTA TCAACAAGAC CTAGTGACCC GTGTAGCTCA AGCTTCTAGA 
GGTCCAGTCA TTTTGGTCCT TATGAGTGGT GGACCAATCG ATGTAACCTT 
CGCTAAGAAT GATCCTCGTG TTGCTGCCAT CATTTGGGCT GGGTATCCGG 
GTCAAGCGGG TGGAGCTGCC ATCGCCAATA TCATCTTTGG TGCTGCTAAT 
CCCGGAGGAA AACTACCAAT GACATGGTAT CCACAAGATT ACGTGGCCAA 
AGTGCCAATG ACGGTAATGG CCATGAGAGC ATCCGGTAAT TATCCAGGAA 
GGACATACAG ATTCTACAAA GGTCCAGTAG TATTTCCATT TGGGTTCGGT 
TTAAGTTACA CTACCTTCAC TCATAGTTTG GCCAAAAGCC CATTGGCCCA 
ACTATCAGTT TCACTCTCCA ATCTCAACTC TGCCAATACC ATTCTCAACT 
CTTCATCACA CTCCATCAAA GTGTCTCACA CCAACTGCAA TTCATTTCCG 
AAAATGCCCC TTCACGTCGA AGTATCAAAC ACAGGTGAAT TCGATGGAAC 
ACACACGGTG TTTGTATTTG CTGAGCCGCC GATAAACGGA ATAAAAGGAT 
TGGGTGTGAA CAAACAATTG ATAGCGTTCG AGAAGGTTCA TGTCATGGCA 
GGGGCAAAAC AGACCGTTCA AGTTGATGTT GATGCTTGCA AGCATCTTGG 
TGTAGTGGAT GAGTATGGAA AGAGGAGAAT CCCAATGGGT GAGCATAAGC 
TGCACATTGG TGACCTTAAA CATACTATTT TGGTCCAACC GCAACTTTGA 
CGGACGCATA AAAAAACCAA CAAATAAGGA AAGCATTTTA ACAAAGTGGA 
GTGTTTCCTC TTATTTATAT AATATAGAGA GATAGGTTTA TTTTCTTATG 
AAATTATTAC TCAAGAAAGT ATGAATTTGT AAAGAACCAC CAAAGGGTTG 
CTTCTTGGTT GTGTCTTTTT TCCTTTAATT TTTTTTTGGA C

Gene models with high sequence identity

  1. AT5G49360.1 [+] show detail - beta-xylosidase 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Glycoside hydrolase, family 3, N-terminal 0.0000038
FPrintScan Glycoside hydrolase, family 3, N-terminal 0.0000038
FPrintScan Glycoside hydrolase, family 3, N-terminal 0.0000038
HMMPfam Glycoside hydrolase, family 3, N-terminal 3.6e-55
HMMPfam Glycoside hydrolase, family 3, C-terminal 1.7e-52
superfamily Glycoside hydrolase, catalytic core 1.4e-97
superfamily Glycoside hydrolase, family 3, C-terminal 2.3e-30
Gene3D Glycoside hydrolase, family 3, N-terminal 9.8e-85
Gene3D no description 4.3e-52

See the detailed result >

AT5G49360.1

Model type
Protein coding
Short Description
beta-xylosidase 1
Curator Summary
Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members.
Computational Description
beta-xylosidase 1 (BXL1); FUNCTIONS IN: alpha-N-arabinofuranosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: seed coat development; LOCATED IN: apoplast, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-xylosidase 2 (TAIR:AT1G02640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-07-E15 introduced

  • F00525 - Specific phenotypes were NOT observed.
  • F09247 - Specific phenotypes were NOT observed.
  • F19631 - Specific phenotypes were NOT observed.
  • F20232 - Specific phenotypes were NOT observed.
  • F26806 - Specific phenotypes were NOT observed.
  • F27433 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found