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  3. RAFL09-07-F06

RAFL09-07-F06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05160)

full reading [+] show sequence

Nucleotide sequence: RAFL09-07-F06 - full reading 
ACGTTAAGCT CTCTCACCTA CCCGAAAGCT GCGAACTTTT CCTAGAAAGC 
TAATTCAAAC GTAGAATATT CTAATCCCAC CACTTAATTT TATAAATGCG 
GAATTCGCGA TTTCGTGGAA TCAATTCTGG CTCTTTCCAG AATAAACGGT 
GGTGGTCACT AGTGTTGGAT TCTCTCTTAT CGTTTTTCGT TAGACTATCA 
GAAATTATCA AGAGATTCTT TCATAAATTT GTATCGATGG GTTTGGGAAA 
CATTTATAGA AGACGAATGA AAGTCTTCTC TATAGCTATA CTTATTTACC 
TCGATTATAA GGGTGTTCAG CAAAAGGAGA AGTGGATTAA GAAGTCTAAA 
GTTCCTGCTT TATGGGATAA AGCTCATGAT CGTAATGCTA AGCGGGTTTT 
GAATTTGATT GTGGAATTGG AAGGGTTATG GGTGAAACTT GGGCAGTATC 
TATCTACTCG TGCTGATGTT TTACCTCAGG CTTATATATC TCTTCTCACT 
CAGTTGCAAG ACTCGCTACC TCCTCGTCCG TTGCAGGAGG TTTGTCGAAC 
TATTGAAAGA GAACTAGGGA ATTCCATGGA TGTTTTGTTC ACCGATTTTG 
TTGACGAGCC TTTGGCAACT GCTTCGATAG CTCAGGTTCA TCGTGCAACT 
CTAGCTAACG GGCAGGATGT GGTTGTTAAA GTTCAGCATG ATGGCATTAG 
AGCGATTATT TTGGAGGACT TAAAGAATGC AAAGTCCATT GTTGACTGGA 
TTGCGTGGGC GGAACCACAG TACAATTTTA ATCCCATGAT AGATGAATGG 
TGCAAGGAAG CTCCAAGAGA ACTAGACTTC AATATTGAAG CTGAAAATAC 
TAGAACAGTA TCCGGGAATC TCGGGTGCAA GAAGACAAAT GATGAAGTTA 
GAAGTGCCAA TCGGGTTGAT GTCTTGATTC CAGATATTAT TCAGTCGTCT 
GAGAGTGTAC TCATTCTGGA GTACATGGAT GGAGTACGTT TGAATGATGT 
GGAATCTCTA GATGCTTTTG GTGTGGATAA ACAAAAGATC GTTGAAGAGA 
TCACTCGTGC ATATGCCCAT CAGATATTTG TTGATGGGTT TTTTAATGGC 
GACCCTCATC CAGGAAATTT TCTTGTTAGT AAGGAACCAC AACATCGTCC 
AATTTTACTT GATTTCGGGC TTTCAAAGAA AATCTCACAC TCCTTGAAAC 
AAGCACTAGC CAAGATGTTT CTAGCATCGG CAGAGGGAGA TCAAGTGGCG 
CTTTTGTCTG CCTTTGCAGA AATGGGACTG AAGCTGCGGC TAGACATGCC 
AGATCAAGCA ATGAGTGTGG CAGGTCTCTT CTTTCGATCT TCAACTCCAT 
CAAGCGAGGC TATGAAAACG TTTAAAACCC TGAACGATCA AAGAGTGCAA 
AATATGAAAG TTATACAGGA GAAGATGCAG CTCAACCAGA AAGAAGTTAA 
ACGCTTCAAT CCGATAGATG CATTTCCTGG TGATATTGTT ATTTTTGCGA 
GGGTCATTAA TTTACTCAGA GGACTTTCAT CTACTATGAA TGTTCGGATT 
GTTTATCTGG ACATCATGAG ACCATTTGCC GAATCTGTTC TGTTAGGGAG 
TATTAGTCGA GGACCAACTG TGGATGCTCA TTGGATACAT GACTCGCCAA 
TCCATTCTGA TGTAGAGTCC AAAGTGAGGA AGCTGCTCGC TGAACTTGGG 
AGTATCCAGA AAATACTTGG AATTCAGGTG TGTGCATATA AAGATGGGAA 
AGTCATAATT GACACTGCTG CTGGAGTGCT TGGAAGATAT GACCCTCGTC 
CAGTTCAACC CGATAGTTTA TTTCCTGTTT TCTCTGTGAC AAAGGGTGTC 
ACTGCTGGAA TGATACATTG GCTTGTTGAC AAAAGGAAAC TCCAGCTCGA 
CCAGACTGTG GCAAATATGT GGCCAGGGTT CGGATCAAAT GGAAAAGATA 
CCATAAAGGT CCATCATGTG CTTAACCATA CATCTGGGAT GCAAAATTCC 
TTTGACCCTG TAGGAGAAAA TCCTCTGCTT ATTTGTGACT GGGATGAATG 
TTTGAAACGG ATTGCTAATT CATCACCTGA AACAGAGCCT GGCAGTCAGC 
AGTCCTATCA CTATCTCACG TTTGGATGGC TATGTGGTGG AATCCTCGAG 
TATGCTTCTG GAAAGAAACT CCAGGAGATC CTTGAAGAGT CCATTGTTAA 
ACCCCTAAAT ATTGATGGAG AACTGTACAT TGGAATCCCC CCAGGTGTTG 
AATCTAGGCT TGCCACATTG ACGTTCGACA CTGATGAAAT GAGCAAGCTT 
TCGTCCATTG CCAGCCAACC TGAGCTTCCT TCCACATTTC AGCCTGACAA 
GATCATACAA ATGGCAACCA ACTTGCCAGT CTTATTTAAC ACATTGAATG 
TGCGCAGAGC CATAATCCCT GCGGCTAATG GACATTGCTC TGCTCGTGCA 
CTTGCAAGGT ACTATGCAAC CCTAGCAGAT GGTGGCCTAG TGCCACCTCC 
ACATTCCTCT TTATCCCAGC CACCACTAGG TAGCCACACC CATGTTCCGA 
AATTCACGTC GTTGAAAGAC ACAACAAAAA AGAAAAAGGG TAAGGAGATG 
GCAGCTACAG AAAAGGGTAA ATCAAAAGAT CATCAAGAGA GGAAGCTTTA 
TGATGAGAAA CAGTTTATGA GTGCTAGTAG CAGCAGAGAG TCAAATACAG 
AAAGTTTAGC CAGGCTAGTT GATACTAACA GTTCTGCTGG CAAAACTGAG 
ATCAATAGCG ATGATCATCA ACATGATATT CATAATATGT TTAGCAACCC 
GAGGATCCAT GATGCTTTCA TGGGTGCTGG AGACTACAGT GGCTTAGTAG 
TGCCTGATGG AAAGTTTGGG CTTGGTTTTA AGCGCGCCAT TTCTCAAGAT 
GGGTCTCTGG TTGGCTTTGG ACATTCAGGG TTAGGAGGAT CAACAGGCTT 
CTGTGACATC AACAACAGAT TTTCCATTGC AGTAACACTG AACAAGATGT 
CTATGGGAGG TGTAACGGCT AATATTGTGA AGCTTGTTTG CTCGGAATTA 
AATATCCCAT TGCCTAAGGA CTTCGCAACT GATATAGGTG CAGATTCGCA 
GATGGGTACG CCTCTAATCA ACTGAGGTTG GTTTTCGACG TAAGTTTTGT 
CTGCTCATGT TACAACATGC ATAGCTGTCG CCTTAAATAG CTAATAGAAA 
TTGCTGGAAA GTAAAGTGTA ATGGATCAGT GTTTTTGTTT GTTTGTCTGT 
ATACTTACTT AAGCGAACAC ATTTAAGCAA TTTCCTTGGA GAATGTAATT 
TATTGGCCTA TACATGCTTC AGTTTCCAGA TT

Gene models with high sequence identity

  1. AT5G24810.1 [+] show detail - ABC1 family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Beta-lactamase-related 3.09999999999998e-42
superfamily Beta-lactamase-type transpeptidase fold 5e-61
HMMPanther PTHR10566:SF7 0
superfamily Protein kinase-like domain 7.5e-13
HMMPfam ABC-1 5.30000000000001e-24
HMMPanther PTHR10566 0
HMMPfam WaaY 0.016
Gene3D G3DSA:3.40.710.10 2.69998997787803e-53

See the detailed result >

AT5G24810.1

Model type
Protein coding
Short Description
ABC1 family protein
Computational Description
ABC1 family protein; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Beta-lactamase-type transpeptidase fold (InterPro:IPR012338), Beta-lactamase-related (InterPro:IPR001466), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC2 homolog 13 (TAIR:AT5G64940.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-07-F06 introduced

  • F13507 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

3 mutant lines found