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  3. RAFL09-07-H17

RAFL09-07-H17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05177)

full reading [+] show sequence

Nucleotide sequence: RAFL09-07-H17 - full reading 
GAGAGCTAAG ATTTTCCCAT CAACTCCATT TGAAGCGAAA TTCTCTGATC 
TCTCTTCATT TTATTTTCCC TCTACATCTC TCCCAACGAT TTCCAAATCT 
CACTTCACTT TGGCTCCTCC ACCTGAATCC ATGGATATTG CTTCGTCATC 
TCTCTCACAA GCTCACAAAG TCGTTCTCAC GCGTCAACCT TCTTCCCGGG 
TCAACACCTG CTCCCTTGGC TCGGTCTCCG CTATCGGATT CTCTCTTCCG 
CAGATTAGCT CTCCAGCTTT AGGTAAATGT CGCCGGAAAC AAAGCTCTTC 
TGGGTTCGTG AAAGCTTGTG TTGCTGTTGA ACAGAAAACC CGAACTGCTA 
TCATCAGAAT TGGCACAAGG GGAAGTCCTC TAGCACTTGC TCAAGCATAC 
GAGACGCGAG AAAAGCTCAA GAAGAAACAC CCTGAACTCG TTGAAGATGG 
AGCTATTCAT ATCGAGATCA TTAAAACGAC TGGTGATAAG ATTCTTTCGC 
AACCGCTTGC TGATATTGGT GGGAAAGGAC TTTTCACCAA AGAAATAGAC 
GAGGCCTTGA TAAATGGTCA TATTGACATA GCTGTGCACT CAATGAAAGA 
TGTCCCAACT TACTTACCAG AAAAAACGAT TTTACCTTGT AACCTTCCGC 
GTGAGGATGT TCGAGATGCG TTTATTTGTC TAACTGCAGC CACGTTAGCT 
GAGCTTCCAG CTGGAAGCGT TGTGGGAACA GCTTCTCTCA GGAGAAAATC 
GCAGATTCTC CACAAATATC CTGCATTACA TGTTGAGGAA AACTTCAGGG 
GTAATGTGCA GACAAGACTA TCAAAACTAC AAGGAGGAAA GGTCCAAGCA 
ACTCTATTAG CACTAGCTGG TCTTAAGAGA TTGAGTATGA CAGAGAATGT 
CGCATCTATC TTATCTCTCG ATGAAATGCT TCCAGCTGTT GCTCAAGGAG 
CTATTGGAAT TGCCTGTAGA ACTGATGATG ATAAAATGGC AACTTACTTA 
GCCTCACTGA ACCACGAGGA AACAAGACTA GCGATTTCAT GCGAGAGAGC 
TTTTCTTGAA ACGCTAGATG GCTCATGCCG TACTCCTATT GCTGGATACG 
CATCCAAGGA CGAAGAAGGC AACTGCATTT TCAGAGGATT GGTTGCTTCC 
CCTGACGGTA CTAAAGTTCT TGAGACCTCA AGAAAAGGTC CATACGTGTA 
TGAAGACATG GTGAAGATGG GAAAAGACGC GGGGCAAGAA TTGCTATCTC 
GTGCTGGTCC TGGCTTCTTC GGCAACTGAG CCATTCGAAG AAGAGGAGGA 
AGAGATGTGA CACGGACAAA GTCTAGTGTT TAGGAGTGAT TCAACATCTT 
GAAGTCCCGT TTCTTCCTCC GAACTGTTGT AACTTTTTTG ATTTTGAGAG 
AAACATGACC TTTTGTTTAT TGATTGTTTT GTTGTATTTA GATTAAATTC 
ATCTTGCAAT TGTACCCC

Gene models with high sequence identity

  1. AT5G08280.1 [+] show detail - hydroxymethylbilane synthase
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Periplasmic binding protein-like II 1.1e-76
superfamily Porphobilinogen deaminase, C-terminal domain 1.2e-20
PatternScan Porphobilinogen deaminase, dipyrromethane cofactor binding site 0
HMMPfam Porphobilinogen deaminase, N-terminal 2.1e-81
HMMPfam Porphobilinogen deaminase, C-terminal domain 4.7e-19
FPrintScan Tetrapyrrole biosynthesis, hydroxymethylbilane synthase 7.7e-44
FPrintScan Tetrapyrrole biosynthesis, hydroxymethylbilane synthase 7.7e-44
FPrintScan Tetrapyrrole biosynthesis, hydroxymethylbilane synthase 7.7e-44
FPrintScan Tetrapyrrole biosynthesis, hydroxymethylbilane synthase 7.7e-44
FPrintScan Tetrapyrrole biosynthesis, hydroxymethylbilane synthase 7.7e-44
HMMTigr Tetrapyrrole biosynthesis, hydroxymethylbilane synthase 2e-130
HMMPanther Tetrapyrrole biosynthesis, hydroxymethylbilane synthase 8.2e-73
Gene3D no description 4.5e-37
Gene3D Porphobilinogen deaminase, C-terminal domain 1.1e-16
HAMAP Tetrapyrrole biosynthesis, hydroxymethylbilane synthase 33.756

See the detailed result >

AT5G08280.1

Model type
Protein coding
Short Description
hydroxymethylbilane synthase
Curator Summary
Encodes a protein with porphobilinogen deaminase activity. This protein is targeted to the chloroplast.
Computational Description
hydroxymethylbilane synthase (HEMC); FUNCTIONS IN: hydroxymethylbilane synthase activity; INVOLVED IN: chlorophyll biosynthetic process, defense response to bacterium, porphyrin biosynthetic process; LOCATED IN: apoplast, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Porphobilinogen deaminase, dipyrromethane cofactor binding site (InterPro:IPR022419), Tetrapyrrole biosynthesis, hydroxymethylbilane synthase (InterPro:IPR000860), Porphobilinogen deaminase, N-terminal (InterPro:IPR022417), Porphobilinogen deaminase, C-terminal domain (InterPro:IPR022418); Has 7343 Blast hits to 7329 proteins in 2247 species: Archae - 198; Bacteria - 4150; Metazoa - 157; Fungi - 178; Plants - 78; Viruses - 0; Other Eukaryotes - 2582 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-07-H17 introduced

  • F21319 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

1 mutant line founds