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  3. RAFL09-07-H21

RAFL09-07-H21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05178)

full reading [+] show sequence

Nucleotide sequence: RAFL09-07-H21 - full reading 
AACCAGAAAA GTGTACTCTA CTGCAACTAC TTCTTCTCTA CTTCTCTACC 
TTAAAACTTC CCCAACCATT TTCTTCTTCA AATCATCATC ATCATCCCTC 
GTACAAAGAA AATGGCCATG AGCATACTCG CGAAGATCTT TCTCGTCTTT 
GCCATCTATT GCGCTATCGA TCCCTTCAGT CACAGCTCCA TTTCCAAGTT 
CCCGGATTTC AAAACTTACA AGATTGACAT GCCTCCGTTA TCGTCACTTC 
CAAAGGAGAG AGACCGCCAG AATCTGTTGC AGAATTCAGA GATCAGGTTT 
CTTAACGAGG TTCAAGGTCC CGAGAGCATT GCTTTCGATC CGCAAGGTCG 
TGGTCCTTAT ACCGGAGTCG CCGACGGTCG AATTCTCTTT TGGAATGGCA 
CTCGTTGGAC AGATTTCGCA TATACTTCGA ACAATCGGTC AGAGCTATGT 
GATCCTAAGC CATCGCTTTT GGATTACTTA AAGGATGAAG ATATCTGTGG 
TCGGCCTTTA GGTCTTCGAT TCGACAAGAA AAATGGGGAT TTGTACATTG 
CAGATGCGTA TTTGGGGATA ATGAAAGTTG GTCCGGAAGG AGGTTTAGCA 
ACTTCTGTTA CAAACGAGGC TGATGGTGTG CCTTTGAGAT TTACCAATGA 
TCTTGACATT GATGATGAAG GCAATGTTTA CTTTACTGAT AGCAGCTCTT 
TCTTCCAACG AAGGAAATTT ATGCTTTTGA TTGTCTCGGG GGAAGACAGT 
GGGAGGGTGT TGAAATACAA TCCAAAAACA AAGGAGACTA CCACTCTCGT 
GAGAAATCTC CAGTTTCCTA ACGGATTATC CCTCGGCAAA GACGGCTCCT 
TTTTCATCTT TTGTGAAGGA TCTATTGGAA GATTACGGAA ATACTGGTTG 
AAAGGGGAGA AAGCTGGAAC GTCAGAAGTG GTAGCTCTAT TACATGGGTT 
CCCAGACAAC ATCCGCACAA ACAAAGATGG AGATTTCTGG GTGGCGGTGC 
ACTGCCACAG AAACATATTC ACACACTTGA TGGCGCATTA CCCGAGGGTG 
AGGAAGTTCT TTCTGAAGCT GCCGATATCA GTGAAGTTTC AGTACTTGCT 
GCAGGTAGGT GGTTGGCCTC ATGCTGTAGC TGTGAAGTAC AGTGAAGAAG 
GGAAAGTGCT AAAGGTGTTG GAAGATAGTA AAGGGAAAGT GGTGAAGGCA 
GTGAGTGAAG TGGAGGAGAA AGATGGGAAG CTTTGGATGG GAAGTGTATT 
GATGTCCTTC ATTGCCGTAT ATGACTTGCC TTAGTTCGTT TCTTTTTCTA 
TTCAAATTTG TATATTTCTA GTTTGGCTAT GGGATTGCAA TATGCATCTC 
GTTATCAAAC TATATTTGAC GTAATCAATT CAAACACAAA CAATTACTAA 
ATACAGTATC CTTTTTGCC

Gene models with high sequence identity

  1. AT1G08470.1 [+] show detail - strictosidine synthase-like 3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Six-bladed beta-propeller, TolB-like 6.4e-44
HMMPanther STRICTOSIDINE SYNTHASE 2.9e-199
HMMPanther Strictosidine synthase 2.9e-199
superfamily Calcium-dependent phosphotriesterase 1.5e-53
HMMPfam Strictosidine synthase, conserved region 2.3e-29

See the detailed result >

AT1G08470.1

Model type
Protein coding
Short Description
strictosidine synthase-like 3
Curator Summary
Although this enzyme is predicted to encode a strictosidine synthase (SS), it lacks a conserved catalytic glutamate residue found in active SS enzymes and it is not expected to have SS activity.
Computational Description
strictosidine synthase-like 3 (SSL3); FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT5G22020.1); Has 1252 Blast hits to 1238 proteins in 269 species: Archae - 3; Bacteria - 366; Metazoa - 225; Fungi - 17; Plants - 480; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-07-H21 introduced

  • F11612 - Specific phenotypes were NOT observed.
  • F17217 - Specific phenotypes were NOT observed.
  • F27826 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found