Home
Full-length cDNAs
RAFL09-07-I16

RAFL09-07-I16

RIKEN Arabidopsis Full-length cDNAs

TTTCTTCTCT CTCGCTTTGC TCTCTCGGAA TTGTTTTTGC AGAAAGTCTC 
TCATCTGAAC TCAGAAAATC TCCGAGTTCG TATATCTTCT CCGTTTGAGC 
AATGGCGTTG GTCATGCACA CATACAAGGG AAACAAAGGT GCCAATAAGG 
CACTTATTGC TGCAGAGTAT GCGGGTGTGA AGATCGAGGA GTCCGCAGAC 
TTTCAGATGG GCGTCACTAA CAAGTCACCT GAGTTCCTTA AGATGAACCC 
TATTGGAAAG GTTCCTGTGC TTGAGACTCC TGAAGGTCCC ATATTTGAGA 
GCAATGCCAT TGCCCGATAT GTGAGCCGTA AGAATGGTGA CAACTCTTTG 
AATGGATCCT CCCTTATTGA ATACGCTCAC ATTGAGCAAT GGATCGATTT 
CTCCTCATTG GAGATTGATG CTAACATGTT GAAGTGGTTT GCTCCAAGAA 
TGGGCTATGC TCCCTTCTCT GCCCCAGCTG AGGAAGCGGC AATTTCTGCA 
TTGAAGAGAG GACTTGAGGC TCTGAACACA CATCTCGCCT CCAACACTTT 
CCTTGTTGGA CACTCTGTCA CCCTTGCTGA TATTGTCACA ATCTGCAACT 
TGAACTTGGG ATTTGCCACC GTGATGACCA AGAAATTTAC CTCTGCATTC 
CCTCATGTTG AGAGATACTT CTGGACAATG GTTAACCAGC CAGAATTCAA 
GAAGGTGTTG GGTGATGCCA AACAAACCGA AGCTGTCCCT CCAGTTCCTA 
CTAAGAAAGC TCCACAGCCT GCTAAGCCCA AGGAGGAGCC CAAGAAGGCA 
GCCCCTGTAG CAGAGGCACC AAAGCCTGCT GAGGAGGAGG AAGCACCAAA 
GCCTAAAGCC AAGAATCCTC TTGACTTGCT ACCACCAAGC CCAATGGTTC 
TCGATGACTG GAAGAGGCTT TACTCGAACA CCAAATCCAA CTTCCGTGAG 
GTTGCTATCA AAGGATTCTG GGACATGTAT GACCCGGAGG GGTACTCACT 
ATGGTTCTGT GACTATAAGT ACAACGATGA GAACATGGTC TCCTTTGTTA 
CACTCAACAA GGTAGGAGGG TTCCTTCAGC GTATGGACTT GGCACGTAAA 
TACTCCTTTG GAAAGATGCT TATTTGCGGG TCAGAGGGTC CTTTCAAGGT 
GAAGGGTTTA TGGCTTTTCC GTGGACCAGA GATCCCCAAG TTCATAATGG 
ATGAGGTGTA CGACATGGAG CTGTACGAGT GGACTAAGGT TGATATCTCC 
GATGAAGCAC AGAAGGAGCG TGTTAGCCAG ATGATTGAAG ACGCTGAGCC 
ATTTGAAGGC GAGGCTCTTT TGGACGCCAA ATGCTTTAAG TGAAAAGGCT 
CTTTGTATCT CCGTAGAGGT TTACTCTGTT ACTCGTGTTT TGATACCTTC 
TAGAGAGTCC TTACCACCTT TTGAATCGTA CTCGGGTTTA AGAACTAGTT 
GCTTCTCAAT GTTATTTTGA CAGAATATTG TTCTTAAATA CATTACAACT 
TCTAGTTATT GTTTTTATTT TGTTTTTTAT TATCCAAACT CGTGTGTGTG 
ACATTCTCTC TTTAAATTAG TTGCTTGGAA GATGCAAAGA ATCTCGTTTA 
ATGGGG

Gene models with high sequence identity

AT1G57720.1 [+] show detail - Translation elongation factor EF1B, gamma chain
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	ELONGATION FACTOR 1 GAMMA	5.4e-107
HMMPanther	GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY,	5.4e-107
superfamily	Translation elongation factor EF1B, gamma chain, conserved	2.5e-59
superfamily	Glutathione S-transferase, C-terminal-like	2.2e-36
superfamily	Thioredoxin-like fold	4e-18
Gene3D	Thioredoxin fold	7.6e-13
Gene3D	Glutathione S-transferase, C-terminal-like	4e-38
HMMPfam	Translation elongation factor EF1B, gamma chain, conserved	1e-39
HMMPfam	Glutathione S-transferase, N-terminal	1.6e-13
HMMPfam	Glutathione S-transferase, C-terminal	9.7e-11
ProfileScan	Translation elongation factor EF1B, gamma chain, conserved	83.106
ProfileScan	Glutathione S-transferase, N-terminal	22.469
ProfileScan	Glutathione S-transferase/chloride channel, C-terminal	24.707

See the detailed result >

AT1G57720.1

Model type: Protein coding
Short Description: Translation elongation factor EF1B, gamma chain
Computational Description: Translation elongation factor EF1B, gamma chain; FUNCTIONS IN: copper ion binding, translation elongation factor activity; INVOLVED IN: response to cadmium ion, response to zinc ion; LOCATED IN: cell wall, plasma membrane, vacuole, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Translation elongation factor EF1B, gamma chain, conserved (InterPro:IPR001662), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1B, gamma chain (TAIR:AT1G09640.1); Has 10185 Blast hits to 9750 proteins in 1401 species: Archae - 0; Bacteria - 5136; Metazoa - 1722; Fungi - 558; Plants - 845; Viruses - 5; Other Eukaryotes - 1919 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL09-07-I16 introduced

F23607 - rosette leaf::desaturated green / rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::abnormal / stem::abnormal

Mutant lines with disrupted or induced

9 mutant lines found