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  3. RAFL09-07-K22

RAFL09-07-K22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05191)

full reading [+] show sequence

Nucleotide sequence: RAFL09-07-K22 - full reading 
CCTCATTCTT CCAATCGCAC TTCCTTTACC AGATCAGACG TCAATTTCAA 
CTCTTCAGTG AAGAGATTTC TTTCACCGAA TTTTCTACTC CGATCGATCA 
ATTGAAGATT GAAATGGAAG CTAATTCAGG CGGAGGAGGA GGAGCTGAAG 
GCGGAAGAGC GGTAACCGGA GGAGGAGGAG GAGGAGGAGG GAGCGATGTG 
GAATTGGTGA GCAAGACGTT GCAAGTGGAG CATAAGCTAT TCTATTTTGA 
TCTTAAGGAG AATCCTCGTG GAAGGTATCT AAAGATATCG GAGAAGACGT 
CGGCGACGAG GTCAACCATC ATTGTTCCTT CCTCCGGCAT CTCTTGGTTC 
CTTGATCTCT TCAACTACTA TGTCAATTCT GAGGAACACG AGCTTTTTAG 
CAAAGAATTG CAGCTTGATT CCAAGGTGTT TTACTTCGAT ATCGGTGAGA 
ACAGAAGAGG ACGCTTCTTG AAGGTGTCAG AAGCATCGGT TAGTAGAAAT 
CGAAGTACCA TTATTGTTCC AGCTGGAAGC TCTCCTGATG AAGGATGGGC 
AGCTTTCAGG AATATATTGG CTGAGATACA TGAAGCATCA GGACTTTTTG 
TGATGCCAAA TCAGAAACCT TCTGATGGAC AGGAACACTT GGTTGATGAT 
GTTGGAGCTG GTTTTATACC TGGACATGGT AGTCAGCAGC CATCTTCTTC 
AGAACATAAT GTGGATCGAA CAATTGACTC GCCAGGCCAG GAAGAAACCG 
GAATGACTGG TGTTTCTAAA GTAATCAGAG CTGACCAGAA ACGGTTCTTC 
TTTGATCTTG GGAACAATAA CAGGGGCCAT TTCTTAAGGA TATCTGAGGT 
GGCAGGTTCT GACAGGTCTT CCATCATTCT ACCGTTATCG GGTCTTAAGC 
AGTTTCACGA AGTAATTGGT CACTTTGTGG AGATCACCAA AGATAAAATT 
GAAGGTATGA CAGGTGCAAA TGTCAGGACA GTTGATCCTC CTCAGAGATA 
AGTATTGATT CTCTTAGAGG ATGGAAATTT TCAATCCTCT AACCATTTGA 
ATCTGGCAAC TTCAAGTCGA CTGCCTGATC GCGGTGTGCA ATAGTTTCAC 
GTAATATCTC TCGCCCCTTC ACATCTTCTA AAAATAATTC AGCAGGATCA 
TCATTTGCCT TAATAGTAGA TAAAACAAAC TTTGGAGTCT GCAACTGGGA 
ATAAGCTGAA AATCATCCAC CATGTGTATC TCTCTCTCTC TCTCTCTCTC 
TCCCTCCCTC CCTCATTTGC TTCTGTTCTG TTTTAACTTT TTTTGTTTTT 
GTTCAGTTTG GGTCATTGGG TGTATATCTG TTGACGGCTT GATGCATTTC 
AATTGTAAAA GAATATTGGG GTTTATATGT TTGGGCTAAT GCCTGTTGGA 
ATAAAAGATG AAGTGTAAGT TCC

Gene models with high sequence identity

  1. AT2G32080.2 [+] show detail - purin-rich alpha 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther PUR-alpha/beta/gamma, DNA/RNA-binding 3.4e-111
HMMSmart PUR-alpha/beta/gamma, DNA/RNA-binding 4e-28
HMMSmart PUR-alpha/beta/gamma, DNA/RNA-binding 2.2e-29
HMMSmart PUR-alpha/beta/gamma, DNA/RNA-binding 5.2e-27
HMMPfam PUR-alpha/beta/gamma, DNA/RNA-binding 1e-22
HMMPfam PUR-alpha/beta/gamma, DNA/RNA-binding 4.2e-12

See the detailed result >

AT2G32080.2

Model type
Protein coding
Short Description
purin-rich alpha 1
Curator Summary
similar to the conserved animal nuclear protein PUR alpha which was implicated in the control of gene transcription and DNA replication
Computational Description
purin-rich alpha 1 (PUR ALPHA-1); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PUR-alpha/beta/gamma, DNA/RNA-binding (InterPro:IPR006628); Has 588 Blast hits to 332 proteins in 74 species: Archae - 0; Bacteria - 31; Metazoa - 438; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-07-K22 introduced

  • F19104 - seed::increased size / seed::increased length
  • F22214 - Specific phenotypes were NOT observed.
  • F26646 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found