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RAFL09-07-N23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05214)

full reading [+] show sequence

Nucleotide sequence: RAFL09-07-N23 - full reading 
ACACAAAGTA ATTACAATGG AACACAGAAA GGTAAGAGGG AACGGCATAG 
ACATTCACGT AGCAATCCAA GGTCCCTCCG ATGGTCCTAT AGTCCTCCTC 
CTCCATGGTT TCCCTGAGCT TTGGTACTCA TGGCGCCACC AGATCCCTGG 
ACTCGCCGCT CGTGGCTACC GTGCCGTCGC TCCTGACCTA CGTGGTTACG 
GTGACTCCGA TGCTCCCGCT GAGATCTCTT CCTACACATG CTTCAACATC 
GTTGGTGACT TAATCGCCGT CATATCCGCC TTAACCGCCT CAGAGGATGA 
GAAGGTCTTT GTGGTTGGAC ATGATTGGGG AGCTCTCATC GCTTGGTATT 
TATGTCTCTT CCGACCAGAT AGAGTCAAAG CTCTGGTCAA CCTCAGTGTT 
CCGTTCTCTT TCCGGCCAAC CGATCCATCG GTGAAGCCCG TTGATCGCAT 
GCGTGCTTTC TACGGCGATG ATTACTATAT CTGCAGGTTT CAGGAATTTG 
GAGATGTAGA AGCTGAGATT GCAGAGGTTG GAACAGAGAG AGTCATGAAG 
AGACTACTCA CTTATAGAAC TCCTGGACCG GTAATTATCC CGAAGGACAA 
AAGTTTTTGG GGATCCAAAG GCGAAACTAT ACCACTCCCG TCTTGGCTAA 
CGGAGGAAGA TGTTGCTTAC TTCGTCAGCA AGTTTGAAGA GAAAGGCTTC 
TCTGGTCCAG TCAATTACTA CCGTAACTTC AACAGGAACA ATGAGTTGTT 
GGGTCCATGG GTGGGAAGCA AAATCCAGGT TCCTACAAAG TTTGTGATAG 
GGGAGCTTGA TCTGGTCTAC TATATGCCTG GTGTGAAGGA ATATATACAT 
GGTCCCCAGT TTAAGGAAGA TGTGCCTTTG CTTGAAGAGC CTGTGGTCAT 
GGAAGGAGTG GCTCACTTCA TTAACCAAGA AAAGCCTCAG GAGATTCTCC 
AAATTATCCT TGATTTCATC TCCAAATTCT AATGTTGCTT TCCCTTAAAT 
TACTCTTTTA ATCAAGTTCC ATAATAAGTT GAATTATGAG GATATACATC 
CTCATGTATG GTTGTATCAT CCTATAACCT ATATAATCTA TGTATGGATG 
CGTGCATATT ATTTGAAAAA AAAAAAAAAA AT

Gene models with high sequence identity

  1. AT2G26740.1 [+] show detail - soluble epoxide hydrolase
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily alpha/beta-Hydrolases 1.1e-62
FPrintScan Epoxide hydrolase-like 2.8e-50
FPrintScan Epoxide hydrolase-like 2.8e-50
FPrintScan Epoxide hydrolase-like 2.8e-50
FPrintScan Epoxide hydrolase-like 2.8e-50
FPrintScan Epoxide hydrolase-like 2.8e-50
FPrintScan Epoxide hydrolase-like 2.8e-50
FPrintScan ABHYDROLASE 4.4e-06
FPrintScan ABHYDROLASE 4.4e-06
FPrintScan ABHYDROLASE 4.4e-06
HMMPanther EPOXIDE HYDROLASE 7.9e-123
HMMPanther ALPHA/BETA HYDROLASE RELATED 7.9e-123
Gene3D no description 9.6e-61
HMMPfam Alpha/beta hydrolase fold-1 5.7e-14

See the detailed result >

AT2G26740.1

Model type
Protein coding
Short Description
soluble epoxide hydrolase
Curator Summary
Encodes a soluble epoxide hydrolase whose expression is induced by auxin and water stress.
Computational Description
soluble epoxide hydrolase (SEH); CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G26750.1); Has 16813 Blast hits to 16796 proteins in 1664 species: Archae - 95; Bacteria - 12002; Metazoa - 658; Fungi - 513; Plants - 624; Viruses - 3; Other Eukaryotes - 2918 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-07-N23 introduced

  • F02210 - Specific phenotypes were NOT observed.
  • F09445 - Specific phenotypes were NOT observed.
  • F18735 - Specific phenotypes were NOT observed.
  • F20115 - Specific phenotypes were NOT observed.
  • F23520 - seed::increased size
  • F24621 - rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / stem::abnormal / whole plant::decreased height / sporophyte vegetative stage::decreased speed / stem::present in fewer numbers in organism

Mutant lines with disrupted or induced

6 mutant lines found