1. Home
  2. Full-length cDNAs
  3. RAFL09-07-O12

RAFL09-07-O12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05217)

full reading [+] show sequence

Nucleotide sequence: RAFL09-07-O12 - full reading 
AATCACTTCA CTCTCTCTAA TCAAAAAGCT TTTAACCTCA GCCGTTAAAT 
CTTTCTCCGA TCATGCCGAC CAGAAACATC GCCATTGGTG GAGTCCAAGA 
AGAGGTCTAT CACCCCAACG CACTTAGGGC GGCGCTCGCT GAGTTTATCT 
CGACTTTGAT CTTCGTCTTC GCCGGCTCAG GCTCCGGAAT TGCTTTCAAC 
AAGATCACTG ACAATGGAGC AACCACTCCT TCCGGCCTCG TCGCCGCTGC 
CTTAGCTCAT GCTTTCGGTC TCTTTGTCGC TGTCTCTGTT GGCGCTAACA 
TTTCCGGTGG CCACGTTAAC CCTGCCGTTA CCTTCGGTGT CTTACTCGGT 
GGTAACATCA CTCTCCTCCG TGGTATTCTC TACTGGATTG CTCAGCTTCT 
TGGCTCCGTC GCCGCTTGTT TCCTCCTTAG CTTTGCCACC GGTGGCGAGC 
CAATTCCAGC GTTCGGTCTC TCTGCCGGAG TCGGATCATT AAACGCTCTC 
GTCTTCGAGA TCGTGATGAC CTTCGGGCTC GTCTACACCG TCTACGCCAC 
AGCCGTTGAC CCCAAGAACG GTAGTCTCGG AACAATCGCA CCAATCGCCA 
TAGGTTTCAT CGTTGGAGCT AACATCCTCG CCGGTGGAGC TTTCAGCGGA 
GCTTCCATGA ACCCAGCCGT TGCTTTCGGA CCAGCCGTCG TAAGCTGGAC 
GTGGACCAAC CACTGGGTTT ACTGGGCTGG TCCTCTTATT GGTGGTGGAC 
TCGCCGGAAT TATCTACGAC TTTGTCTTCA TCGATGAAAA TGCCCACGAG 
CAATTGCCTA CCACCGATTA CTGAAGACGT CAAATTCAAC GTTGTTAATC 
TGATGAATTT TTCGTGATTT GCTTTTTTAA TTTGCATCGT AATGGGTTTC 
TGGCCGTTGG ATCATTTTTA GATGAATCTT TGTCTATTGA TTGATCATTT 
ATGTGTCTTT GGGTTTGTTG TTGGAGTTGT AATATCTCTG GAAGGCTTTT 
GTGCAATTGT ATTGTACGGT TTAATAACTA TAATTGAGAA AACCAGGGAA 
TGTGAATTAC G

Gene models with high sequence identity

  1. AT3G26520.1 [+] show detail - tonoplast intrinsic protein 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Major intrinsic protein, conserved site 0
HMMPfam Major intrinsic protein 4.8e-76
FPrintScan Major intrinsic protein 4.8e-52
FPrintScan Major intrinsic protein 4.8e-52
FPrintScan Major intrinsic protein 4.8e-52
FPrintScan Major intrinsic protein 4.8e-52
FPrintScan Major intrinsic protein 4.8e-52
FPrintScan Major intrinsic protein 4.8e-52
HMMTigr Aquaporin 6e-68
HMMPanther TONOPLAST INTRINSIC PROTEIN 1e-127
HMMPanther Major intrinsic protein 1e-127
Gene3D Major intrinsic protein 1.1e-62
superfamily Major intrinsic protein 5.5e-64

See the detailed result >

AT3G26520.1

Model type
Protein coding
Short Description
tonoplast intrinsic protein 2
Curator Summary
gamma tonoplast intrinsic protein 2 (TIP2). expressed throughout the plant and transcript level is increased upon NaCl or ABA treatments. NaCl stress-sensitive yeast mutant strains exhibit more resistance to salt when expressing this protein.
Computational Description
tonoplast intrinsic protein 2 (TIP2); FUNCTIONS IN: water channel activity; INVOLVED IN: response to salt stress, transport, defense response to bacterium, hydrogen peroxide transmembrane transport, water homeostasis; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: gamma tonoplast intrinsic protein (TAIR:AT2G36830.1); Has 10870 Blast hits to 10853 proteins in 2179 species: Archae - 81; Bacteria - 5139; Metazoa - 1484; Fungi - 429; Plants - 2489; Viruses - 0; Other Eukaryotes - 1248 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-07-O12 introduced

  • F03040 - Specific phenotypes were NOT observed.
  • F04026 - Specific phenotypes were NOT observed.
  • F05037 - Specific phenotypes were NOT observed.
  • F07842 - Specific phenotypes were NOT observed.
  • F08821 - seed::increased size / seed::increased length
  • F12648 - Specific phenotypes were NOT observed.
  • F18103 - rosette leaf::abnormal / cauline leaf::epinastic / stem::abnormal
  • F21135 - Specific phenotypes were NOT observed.
  • F23420 - seed::increased size / seed::increased length
  • F24551 - Specific phenotypes were NOT observed.
  • F24807 - seed::increased size / seed::increased length
  • F25033 - Specific phenotypes were NOT observed.
  • F28711 - Specific phenotypes were NOT observed.
  • F29749 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

16 mutant lines found