1. Home
  2. Full-length cDNAs
  3. RAFL09-09-E15

RAFL09-09-E15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05249)

full reading [+] show sequence

Nucleotide sequence: RAFL09-09-E15 - full reading 
AGTCTGAAAA CTCTGTAGCT CTCTCACTTC AGCTTTCCAA TTAAAGGGAA 
CAAAGCTTTG ATTTTTGCCG CAGTCAGAAG CATTACTTTG CAAGAACAAG 
TGTGTAAACA AAGATGAGGA GCTCCCAAAA CGGCGGCGCA ATGGGTGGAC 
GAGCTGCCGG AACCGGCGGA GGAGGACCGT CGGCTCCAGT TGACAAAGAA 
GTTGACTACG CTCAGTACTT CTGTACTTAC TCCTTCCTAT ACCACCAGAA 
GGATATGCTC TCCGACCGTG TCCGTATGGA TGCTTACTTC AACGCCGTCT 
TCCAGAACAA ACATCACTTT GAGGGCAAGA CGTGGGCACC GGGAGTGGAA 
TTCTTGCAAT TTGGTCAGCT CAAGCTGGTG CCAGGAAGGT TTATGCCGTT 
GAAGCTACTA AGATGGCTGA TCATGCTCGT GCCCTTGTCA AAGCCAATAA 
CCTTGACCAT ATTGTAGAAG TCATTGAAGG ATCTGTCGAG GATATTTCAT 
TGCCTGAGAA AGTTGATGTA ATTATCTCGG AGTGGATGGG ATACTTCCTT 
CTGCGGGAGT CCATGTTTGA TTCTGTGATT AGTGCTCGTG ACCGATGGTT 
AAAGCCAACA GGTGTCATGT ACCCTAGTCA TGCTCGCATG TGGCTTGCAC 
CCATCAAGTC CAATATAGCA GATCGGAAGA GGAATGATTT CGATGGGGCA 
ATGGCAGACT GGCATAACTT TTCGGATGAG ATCAAAAGTT ACTATGGGGT 
TGATATGGGA GTTTTAACAA AACCTTTTGC TGAAGAGCAA GAAAAGTATT 
ACATACAGAC TGCTATGTGG AATGACTTGA ATCCACAACA AATCATAGGC 
ACTCCCACAA TTGTCAAGGA GATGGATTGT TTGACAGCAT CTGTCAGTGA 
AATCGAGGAA GTCAGATCAA ATGTAACGTC AGTTATCAAT ATGGAGCATA 
CAAGGCTATG TGGTTTTGGT GGATGGTTCG ATGTTCAGTT CTCGGGGAGA 
AAAGAAGACC CCGCACAGCA AGAAATCGAG TTGACCACAG CTCCAAGTGA 
GCAGCACTGC ACGCACTGGG GACAACAGGT TTTCATTATG TCGAATCCTA 
TAAATGTTGA GGAAGGTGAT AATCTGAATC TTGGTTTGTT AATGAGCCGG 
TCCAAGGAAA ATCACCGACT AATGGAGATT GAGCTTAACT GTGAAATAAA 
AGAAGCATCT GGTAACCCCA AAGAATCTTT CAAGAAGACT TACTTCATAG 
AGTGATTGAT TGATTATAGA GAAGCTTTCC TTGGGGCTTG CTGGTTCTTG 
TATCCCATGT ATGAACCCCA AATGTAATGT TTTATTGCTT CTTGCCTTTT 
TTTTCTATGT AAACGAGATT GTTATACCAA TTTTCAATAG ATTTTTATAT 
GGGTGATATA ATTTAT

Gene models with high sequence identity

  1. AT1G04870.1 [+] show detail - protein arginine methyltransferase 10
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther PROTEIN ARGININE N-METHYLTRANSFERASE 2 3.4e-200
HMMPanther PROTEIN ARGININE N-METHYLTRANSFERASE 3.4e-200
Gene3D no description 1.6e-34
Gene3D no description 5.2e-34
Gene3D no description 0.00055
superfamily S-adenosyl-L-methionine-dependent methyltrans 6.3e-45
HMMPfam Skb1 methyltransferase 9.9e-13

See the detailed result >

AT1G04870.1

Model type
Protein coding
Short Description
protein arginine methyltransferase 10
Curator Summary
Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro. Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.
Computational Description
protein arginine methyltransferase 10 (PRMT10); FUNCTIONS IN: methyltransferase activity; INVOLVED IN: vegetative to reproductive phase transition of meristem; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Skb1 methyltransferase (InterPro:IPR007857); BEST Arabidopsis thaliana protein match is: protein arginine methyltransferase 6 (TAIR:AT3G20020.1); Has 1641 Blast hits to 1634 proteins in 326 species: Archae - 0; Bacteria - 17; Metazoa - 883; Fungi - 244; Plants - 262; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-09-E15 introduced

  • F08836 - Specific phenotypes were NOT observed.
  • F14145 - Specific phenotypes were NOT observed.
  • F17433 - Specific phenotypes were NOT observed.
  • F18102 - Specific phenotypes were NOT observed.
  • F21838 - Specific phenotypes were NOT observed.
  • F25931 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

7 mutant lines found