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  3. RAFL09-09-G17

RAFL09-09-G17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05258)

full reading [+] show sequence

Nucleotide sequence: RAFL09-09-G17 - full reading 
AAAAGTGAGA GACACACAAC TTCGGAGCGA ATCTATTCTT CTTCTTCTTC 
TTCTTCTTCT TCTTCTTCTT CCTCCGTTTT TTTCATCTTC TTCTCTGTTT 
CGAGAGATCC ACTAGTGAAA GAGTCAGCAC CATGGCCATG GTCAAAGAGA 
AAGAACAAAA CACTAAAGAC AAAAAACTCC TCGTCGGCGT CATTTGGAAC 
TTCTCCGCCG AGCTCAAGCT CACTTTCATG GCGTTACTTG TTCTCTGCAC 
TTTAGCTACT CTCTTACCTT TCATACCTTC TTCATTCTCT CTCTCCACTT 
CCGATTTCCG CTTCTGCATC TCACGCTTCT CCTCCGCCGT CCTCTCAACA 
CCACCACCAC CGTAGAAGAA TCATCATCCT CACCGTCACC GGAGAAGAAC 
CTAGATCGAG TTTTGGATAA CGGAGTTATT AAACGGACGT TTACTGGCTA 
CGGCTCAGCA GCTTATAACT TCGTCTCAAT GAGTGCTTAC AGAGGCGGCG 
TTAACTCATT CGCCGTTATC GGATTATCAT CAAAACCATT ACACGTGTAC 
GGTCATCCTT CGTATAGATG CGAATGGGTC TCATTAGACC CGACTCAAGA 
TCCGATTTCA ACAACCGGGT TTAAAATCTT AACCGATTGG GGTTACGGAC 
GGATCTACAC AACAGTCGTC GTTAACTGTA CTTTCTCATC AATCTCCGCC 
GTGAATCCAC AAAACTCCGG TGGAACTCTC ATCCTCCACG CCACCACCGG 
AGATCCAACT CTCAATCTCA CCGATTCAAT CTCAGTCCTA ACCGAACCTC 
CCAAATCCGT CGATTTCGAT CTCTATAACT CCACGAAGAA GACGAAGAAG 
TACGATTATC TCTATTGCGG ATCGTCCTTA TACGGTAACC TAAGTCCGCA 
ACGAGTTAGA GAATGGATCG CTTACCACGT TAGATTCTTC GGTGAACGGT 
CACATTTCGT GCTACACGAC GCCGGAGGGA TTCATGAGGA AGTGTTCGAG 
GTTTTAAAGC CATGGATTGA GCTAGGGAGA GTGACGTTAC ATGATATTAG 
AGATCAAGAA CGATTCGATG GATATTATCA TAATCAGTTC ATGATAGTGA 
ATGATTGTTT GCATAGGTAT AGATTCATGA CGAAGTGGAT GTTCTTCTTT 
GATGTTGATG AGTTTTTACA TGTTCCAGTG AAAGAGACGA TTTCGTCTGT 
GATGGAATCT TTGGAGGAAT ATTCTCAGTT TACTATTGAA CAGATGCCTA 
TGAGTAGTCG GATTTGTTAT TCCGGTGATG GTCCGGCGAG AACTTACAGG 
AAATGGGGAA TTGAGAAACT GGCATATAGA GACGTCAAGA AGGTTCCAAG 
ACGGGATCGA AAATACGCTG TCCAGCCGGA GAATGTATTC GCGACAGGCG 
TACACATGTC TCAGAATCTA CAAGGGAAAA CATACCACAA GGCTGAAAGC 
AAAATCCGTT ACTTCCACTA CCATGGTTCG ATCTCTCAGC GCCGCGAGCC 
TTGTCGTCAA CTTTTTAACG ATTCTCGAGT CGTGTTCGAG AACACTCCTT 
ATGTGCTAGA CACTACAATA TGTGATGTTG GCCTTGCTGT GAGAACGTTC 
GAGTTGAGAA CGATCGGTGA TCGGCTGCTA CGGACAAGAC AATGAAGAGA 
TGGCAAAAAT GAATAGTGAA TGTAATCAAT CTTTAGAAAG AAGAATTAGA 
AGGTGTTAAG ATGAGTTACT TTGTATTATT TTCTTTTGGG GGTATATTCT 
TTTATTGTAT CATATAATTT GGGTAATGGG TTCATTAATA CAGCTTGAAA 
ATAAAG

Gene models with high sequence identity

  1. AT4G20170.1 [+] show detail - Domain of unknown function (DUF23)
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
HMMPanther UNCHARACTERIZED 8.2e-09
Coil coiled-coil 0
Coil coiled-coil 0
HMMPfam Protein of unknown function DUF23 4.4e-29

See the detailed result >

AT4G20170.1

Model type
Protein coding
Short Description
Domain of unknown function (DUF23)
Computational Description
Domain of unknown function (DUF23); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF23) (TAIR:AT5G44670.1); Has 199 Blast hits to 199 proteins in 36 species: Archae - 0; Bacteria - 27; Metazoa - 44; Fungi - 2; Plants - 116; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-09-G17 introduced

  • F15120 - seed::increased size

Mutant lines with disrupted or induced

2 mutant lines found