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  3. RAFL09-09-J21

RAFL09-09-J21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05277)

full reading [+] show sequence

Nucleotide sequence: RAFL09-09-J21 - full reading 
AAAACTCACA TCTATCTCTA TCTCTCTTCT CTGTCTCTCA CTCTCCACTT 
TCCGATCACC GACGATTCAA CAAAACATAG TAAAAAACAA AGCAAATTCT 
TTTTTTCTCC TTAGTTACTT CTTCTACAGA TTATCTCAAT CTTACAGAGC 
ACCATGGATC GTTGTATCTA TGGTTGCTCC GTCATTACTA TCTTCTTCTC 
CTTCTTCTTC CTCCTCAATG CATCCGCTTT AGAATCGGGT CACCACAACA 
TAACTGGGTC GGGTCAAATA AACTCAAACT CCGTCCTCGT AGCTCTCCTC 
GATTCTCGTT ACACTGAACT CGCCGAGCTA GTTGAGAAGG CTCTTCTTCT 
CCAAACCCTC GAAGACGCCG TTGGTCGTCA CAATATTACT ATTTTCGCCC 
CACGCAATGA AGCACTCGAG CGTGACCTTG ACCCGGATTT TAAACGGTTC 
TTGCTCCAAC CAGGTAACCT CAAATCTCTC CAAACGCTTC TCTTGTCTCA 
CATTATCCCC AAACGAGTCG GGTCAAACCA ATGGCCTGAG GAGAATTCGG 
GTCGGGTCAA ACACGTCACG TTAGGGCATG ACCAAGTGCT GCATTTGAGT 
AAACTCAAAG GAACAAATGG AAAGAGATTG GTGAATTCCG CTGTAATTAC 
CCGACCCGAT GATTTAACCC GACCCGACGG GTTGATCCAC GGAATCGAAC 
GGCTTTTAAT CCCTCGTTCC GTTCAAGAAG ATTTCAACCG ACGGAGAAAT 
CTCCGATCAA TCTCCGCCGT ATTACCCGAA GGAGCTCCGG AAATCGACCC 
GAGAACCAAC CGTCTCAAGA AATCTGCCAC CGCCGTCTCA GTACCCGCCG 
GATCTCCACC AGTGCTTCCG ATTGAATCCG CTATGGCTCC AGGTCCATCG 
CTAGCTCCGG CTCCGGCTCC AGGACCTGGA GGTGCACACA AACATTTCAA 
CGGCGATGCT CAGGTCAAAG ATTTCATCCA CACATTGTTA CATTACGGTG 
GATACAACGA AATGGCGGAT ATTCTCGTGA ATCTGACGTC ACTTGCGACG 
GAGATGGGTC GATTGGTGTC AGAAGGTTAC GTCCTCACCG TGTTAGCTCC 
GAACGATGAA GCTATGGGGA AATTAACGAC TGATCAGCTT AGCGAGCCCG 
GAGCTCCGGA GCAAATTATG TATTACCACA TTATTCCAGA GTATCAGACG 
GAGGAAAGCA TGTATAATTC TGTTAGGAGA TTTGGGAAGG TGAAGTATGA 
AACGCTGCGT TTTCCTCACA AGGTTGGGGC TAAAGAAGCT GATGGCTCGG 
TTAAATTCGG TTCTGGTGAC CGGTCGGCTT ATTTGTTTGA TCCGGATATT 
TACACCGATG GTCGCATTTC GGTTCAGGGG ATTGATGGTG TTTTGTTCCC 
AGAGGAGAAG GAAGAAGAGA CGGTTAAGAA ACCGACCGGT CCGGTTAAGA 
AAGTTGTTCA GCCGAGAAGA GGGAAGTTGC TGGAAGTAGC ATGTAGTATG 
CTTGGAGCTA TTGGGAAGGA CTCATATCTA AGCAGATGCT GATGAATTCA 
CAAACCTGAA GAGATTATTG AAGGAAAATC TCTCAAGTGT TATCTGTAAA 
CACACACAAA AGGTTCTTTG GAGCAGAATG AAAGATTTAG AAGAAGAGCA 
G

Gene models with high sequence identity

  1. AT3G11700.1 [+] show detail - FASCICLIN-like arabinogalactan protein 18 precursor
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart FAS1 domain 8.5e-16
HMMSmart FAS1 domain 5e-16
superfamily FAS1 domain 1.2e-21
superfamily FAS1 domain 6.3e-19
ProfileScan FAS1 domain 16.763
ProfileScan FAS1 domain 9.349
HMMPfam FAS1 domain 4.7e-21
HMMPfam FAS1 domain 1.9e-06

See the detailed result >

AT3G11700.1

Model type
Protein coding
Short Description
FASCICLIN-like arabinogalactan protein 18 precursor
Computational Description
FASCICLIN-like arabinogalactan protein 18 precursor (FLA18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cyclopentenone, cell adhesion; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 17 precursor (TAIR:AT5G06390.1); Has 488 Blast hits to 470 proteins in 128 species: Archae - 2; Bacteria - 195; Metazoa - 32; Fungi - 4; Plants - 192; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-09-J21 introduced

  • F09749 - Specific phenotypes were NOT observed.
  • F22511 - Specific phenotypes were NOT observed.
  • F23118 - Specific phenotypes were NOT observed.
  • F28744 - seed::increased length

Mutant lines with disrupted or induced

8 mutant lines found