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  3. RAFL09-09-K20

RAFL09-09-K20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05286)

full reading [+] show sequence

Nucleotide sequence: RAFL09-09-K20 - full reading 
AGAGTTAGAG AGAGAGAGAC CACGCCAGAT ATACCTTTCT TGTTTCACCG 
GTTTTCATAC ACAAAAATGG CGGGCAGTGC CTCATTCGCC GCCGCATTAT 
TCATCGGACT CTCTCTTCTC TTCGCCGTCA CGGCTGAAGA TCCGTACAGA 
TTCTTTGAAT GGAACATAAC TTACGGCGAT ATATACCCAC TCGGTGTTCG 
CCAACAGGGT ATTTTGATCA ACGGGGCGTT TCCGGGACCG GACATTCATT 
CGGTTACTAA TGACAATCTC ATCATCAACG TCTACAATAG CCTCGACGAA 
CCTTTCCTTC TTTCATGGAA TGGAATTCAA CAGAGGAGGA ACTCTTTCGT 
TGATGGAGTG TATGGAACGA CATGCCCAAT CCCGCCGGGG AAGAACTACA 
CTTACATTCT TCAGATGAAG GATCAGATCG GAAGTTTTTA CTACTTCCCT 
TCTCTCGGCT TTCACAAAGC CGCCGGTGGA TTTGGTGGCA TTCGTATCCT 
CAGTCGTCCT AGAATCCCGG TCCCTTTCCC TGATCCCGCC GGAGATACCA 
CTGTCCTTAT CGGAGACTGG TACAAAGCAA ACCACACGGA TTTGAGAGCA 
CAGCTTGATA ATGGTAAGAA GCTTCCTTTA CCAGACGGCA TCCTCATCAA 
TGGTCGTTCA AGTGGTGCAA CTCTTAATGT TGAACAAGGT AAGACATACA 
GGTTTAGAAT ATCCAATGTA GGGTTACAAG ACTCTCTCAA CTTCCGCTTT 
CAAGACCATA AGATGAAAGT GGTGGAAGTC GAAGGAACAC ACACTCTTCA 
GACTACTTTC TCTTCACTAG ATGTTCATGT TGGACAATCT TACTCAGTCC 
TTGTAACCGC GGACCAGACT CCACGGGATT ATTACGTGGT CGTCTCTTCT 
CGGTTTACCT CAAATGTCCT TACTACCACG GGTATTTTCC GATACAGTAA 
TTCTGCTGGT GGTGTTTCTG GACCTATTCC TGGTGGACCT ACCATTCAAA 
TCGACTGGTC CTTGAACCAG GCTCGAGCCA TCAGGACTAA CCTTTCAGCG 
AGCGGACCAA GGCCAAATCC ACAAGGATCG TACCACTACG GTATGATAAA 
CACTACAAGA ACGATCAGAC TTGCTAGCTC TGCTGGTCAG GTTGATGGGA 
AGCAACGATA CGCTGTGAAC AGTGTCTCAT TCAAACCCGC AGACACTCCT 
CTGAAAATCG CGGACTACTT CAAGATTGAC GGTGTTTACA GAAGTGGAAG 
CATACAGTAC CAACCCACTG GTGGAGGAAT ATACCTCGAC ACATCTGTTA 
TGCAAGTTGA TTACAGAACC TTTGTGGAGA TTATTTTCGA AAATTCTGAG 
GATATTGTCC AGAGCTGGCA TCTTGATGGT TACTCTTTCT GGGTTGTTGG 
AATGGATGGT GGACAGTGGA GTCCAGATAG TAGGAACGAG TATAACCTAC 
GCGATGCAGT CGCTCGCTGC ACCGTTCAGG TATACCCAAG CTCATGGACG 
GCTATATTGA TAGCACTCGA CAACGTAGGA ATGTGGAATC TAAGATCCGA 
GTTCTGGGCG AGGCAATACT TAGGACAACA ATTGTATTTA CGTGTGTACA 
CACCCTCAAC TTCTCTCAGA GATGAATATC CAATCCCCAA GAACGCTCTT 
CTCTGCGGGA GAGCCAGTGG TCGCAGCACC AGACCGCTTT GAGCTGGTGG 
TTAGATATAG AAATGACGGA GAGATGGTCA GCCAAACCAG CTGACGCGTT 
CTTGAGGCGG GTTTCTTGTT TTATACACAT TCTTCATTTT GCTAATGAAT 
GAGAAGAGTT TATGTTAAAA TCAGTATATC AGTTTGTAAC GATCTCAGCT 
CGAGGTCTCA TTCTTGATTC TTATATTCTT TCTTTTTCTA TGGAACGAAA 
CATTTATTCA ATATAATTCC ACAGTTTCAT CGTG

Gene models with high sequence identity

  1. AT1G76160.1 [+] show detail - SKU5 similar 5
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
HMMPanther PECTINESTERASE 0
HMMPanther MULTI-COPPER OXIDASE 0
superfamily Cupredoxin 6.8e-47
superfamily Cupredoxin 1.7e-40
superfamily Cupredoxin 5.8e-38
HMMPfam Multicopper oxidase, type 1 6.2e-43
HMMPfam Multicopper oxidase, type 3 1.4e-32
HMMPfam Multicopper oxidase, type 2 1.6e-28
Gene3D Cupredoxin 5.6e-34
Gene3D Cupredoxin 1.4e-47
Gene3D Cupredoxin 6.2e-57

See the detailed result >

AT1G76160.1

Model type
Protein coding
Short Description
SKU5 similar 5
Computational Description
SKU5 similar 5 (sks5); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: apoplast, cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5-similar 6 (TAIR:AT1G41830.1); Has 5094 Blast hits to 5026 proteins in 887 species: Archae - 12; Bacteria - 1432; Metazoa - 265; Fungi - 1965; Plants - 1269; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-09-K20 introduced

  • F14005 - seed::increased size
  • F20518 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found