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  3. RAFL09-10-I20

RAFL09-10-I20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17635)

full reading [+] show sequence

Nucleotide sequence: RAFL09-10-I20 - full reading
CCCCCGACTG CTCCCAAGTC CTCTCACTTC TTCTTCTTCC TCCGACACCG 
TTGCTTAACG GTTTTCCATT TTTGTCCCTT CAAGATGATC TCATGGCACG
ACCTCTACAC GGTCCTCACC GCCGTGATTC CTCTCTACGT GGCCATGATC
CTCGCTTACG GCTCTGTCCG GTGGTGGAAA ATCTTCTCAC CCGACCAATG
CTCCGGAATC AACCGTTTTG TCGCCATCTT CGCCGTCCCT CTCCTCTCTT
TTCACTTCAT CTCCACCAAC AATCCTTACG CAATGAATCT CCGGTTCATC
GCCGCCGACA CTCTCCAAAA AATCATCATG TTGTCACTTT TAGTCCTATG
GGCTAATTTC ACTCGCTCCG GTAGCCTCGA GTGGAGCATC ACAATCTTTT
CCCTCTCCAC ACTTCCCAAC ACTCTTGTTA TGGGGATTCC TCTCTTGATC
GCCATGTATG GCGAATACTC TGGTTCCCTC ATGGTCCAAA TCGTCGTCCT
CCAGTGTATC ATCTGGTACA CGCTTCTCCT TTTTCTCTTC GAGTTTCGTG
GCGCCAAGAT GCTCATCATG GAGCAGTTCC CTGAGACGGC TGCTTCCATT
GTTTCTTTCA AAGTCGAATC CGACGTCGTT TCGCTCGACG GCCATGATTT
TCTTGAGACC GATGCAGAGA TAGGTGACGA CGGGAAGCTT CACGTCACCG
TGAGAAAATC CAACGCTTCA CGTCGTTCGT TCTGCGGCCC GAACATGACT
CCACGGCCGT CAAATCTCAC CGGAGCTGAG ATTTATAGTC TCAGCACCAC
TCCTAGAGGC TCTAATTTCA ACCACTCTGA TTTTTACAAC ATGATGGGTT
TCCCCGGTGG TCGTCTCTCC AATTTCGGTC CGGCGGATAT GTACTCCGTT
CAATCATCTA GAGGTCCAAC TCCTCGACCT TCAAACTTCG AGGAGAATTG
CGCCATGGCA TCCTCCCCGA GATTCGGGTA TTACCCTGGA GGAGGAGCCG
GGTCTTATCC GGCTCCGAAT CCAGAGTTCT CTTCAACCAC CACATCTACC
GCCAATAAAA GCGTCAATAA AAACCCGAAA GACGTTAATA CGAATCAGCA
GACGACTCTT CCAACGGGCG GCAAGTCAAA CAGCCATGAC GCCAAGGAGC
TTCACATGTT CGTCTGGAGC TCAAACGGGT CACCCGTTTC AGACCGGGCG
GGTCTTAACG TTTTCGGCGG AGCACCTGAC AACGATCAAG GCGGAAGATC
TGACCAAGGT GCTAAAGAGA TCCGTATGTT AGTCCCAGAT CAATCTCACA
ACGGCGAGAC CAAAGCTGTA GCTCATCCAG CAAGTGGAGA TTTCGGAGGA
GAACAACAAT TTAGTTTCGC CGGAAAAGAA GAAGAAGCAG AGAGACCAAA
AGACGCCGAG AATGGTCTAA ACAAACTTGC TCCAAATTCC ACGGCGGCGC
TACAATCCAA GACAGGTCTA GGAGGAGCCG AAGCAAGTCA ACGAAAAAAT
ATGCCTCCGG CGAGTGTGAT GACAAGGCTG ATACTGATAA TGGTTTGGAG
GAAACTCATC AGAAACCCAA ACACTTACTC TAGTCTCATT GGACTTATTT
GGGCTCTCGT CGCTTTCCGG TGGCACGTGG CAATGCCCAA AATCATTCAA
CAATCTATCT CCATTCTATC TGATGCTGGT CTTGGAATGG CAATGTTTAG
TTTGGGGTTG TTCATGGCGT TGCAACCCAA ATTAATCGCT TGTGGGAATT
CAGTGGCAAC GTTTGCCATG GCGGTTAGGT TCCTTACGGG TCCGGCCGTG
ATGGCGGTTG CTGCTATAGC CATCGGATTA CGTGGTGATT TACTGCGTGT
CGCTATAGTT CAGGCCGCAT TACCTCAAGG AATTGTGCCC TTTGTGTTTG
CGAAGGAGTA CAATGTTCAT CCTGCTATTT TAAGTACAGG GGTAATATTT
GGAATGCTTA TAGCGCTTCC GATCACGCTG GTTTACTACA TTCTACTCGG
GTTATAAGCT TTCGGTTATG AAAGCCCCGA GAAAGAGTCA ATTGTAGAGG
GAGAAGGAAG AAAGGGAAAC TAGAGAGTGT CTCATGGAAC AAACTAAAAA
AAGCTTAGAG TATGTAAGTA CAACTAGGGA GTAGCATGAT TTAAGGAATG
CTGATGCCAA CATTACAAGC CAAGAAACCC TTTCTTCTCC CATATTTTTT
ATATATAGAA TATTGGGAGA TTATTTGAGT GAGACAATGG GACGCAGATA
AGGAGGAGCA AAACATGGGG CAACGAGACA AAGAAAAGAT AAATAAAAGA
TTGGAAGATG AAGACAACTT ATTATTTTTG TAACTTTTAT TTTTCTTACA
CAGTCTTTTT TTTTTTTTTT TGTGTTCTTT GATTAGGTTC GGGTAACTCT
TAGTTGATTA TTGTGTAGAT TTTTTTTAGC GAAGAAAAGT GTGGTTTTGA
TTTTGAACAA AAAAA

Gene models with high sequence identity

  1. AT1G70940.1 [+] show detail - Auxin efflux carrier family protein
    E-value: 0; Score: 99.96

 

InterPro Scan Digest

Program Description E-value
HMMTigr Auxin efflux carrier, subgroup 0
Coil coiled-coil 0
HMMPfam Auxin efflux carrier 6.7e-187

See the detailed result >

AT1G70940.1

Model type
Protein coding
Short Description
Auxin efflux carrier family protein
Curator Summary
A regulator of auxin efflux and involved in differential growth. PIN3 is expressed in gravity-sensing tissues, with PIN3 protein accumulating predominantly at the lateral cell surface. PIN3 localizes to the plasma membrane and to vesicles. In roots, PIN3 is expressed without pronounced polarity in tiers two and three of the columella cells, at the basal side of vascular cells, and to the lateral side of pericycle cells of the elongation zone. PIN3 overexpression inhibits root cell growth. Protein phosphorylation plays a role in PIN3 trafficking to the plasma membrane.
Computational Description
PIN-FORMED 3 (PIN3); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: in 8 processes; LOCATED IN: lateral plasma membrane, plasma membrane, vesicle membrane, cell surface; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G23080.1); Has 1983 Blast hits to 1757 proteins in 550 species: Archae - 37; Bacteria - 1198; Metazoa - 14; Fungi - 0; Plants - 487; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-10-I20 introduced

  • F03824 - Specific phenotypes were NOT observed.
  • F12934 - seed::increased size

Mutant lines with disrupted or induced

6 mutant lines found