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  3. RAFL09-10-J18

RAFL09-10-J18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05365)

full reading [+] show sequence

Nucleotide sequence: RAFL09-10-J18 - full reading 
TCATCAAACG AGTAAAACAT TTGCTAATAT TAAACACTTT TTCTTTTAGA 
AAAAAAAACA AATATGGCCG TTGATTCACC TCTTCAATCT CGGATGGTTT 
CAGCGACGAC TTCTGAGAAA GATGTGAAAG CTCTCAAGTT CATTGAAGAA 
ATGACTCGGA ACCCTGACTC GGTTCAAGAG AAGGTTCTTG GAGAGATACT 
GACTCGTAAC TCTAACACCG AATATCTGAA ACGGTTCGAT CTTGATGGTG 
TCGTTGATCG GAAAACGTTC AAGAGCAAAG TTCCGGTGGT TACGTACGAA 
GATTTGAAGC CGGAGATTCA ACGTATATCC AACGGCGATT GTTCTCCGAT 
CTTGTCTTCT CACCCCATCA CCGAGTTTCT CACAAGCTCA GGAACATCTG 
CTGGTGAGAG GAAACTAATG CCAACAATTG AAGAAGACTT AGACCGACGT 
CAGCTTTTAT ACAGTCTTCT CATGCCTGTG ATGAATCTCT ACGTGCCGGG 
ATTAGACAAA GGCAAAGGGT TATACTTCTT ATTCGTGAAG TCGGAGTCAA 
AGACGTCAGG TGGGTTACCG GCTCGTCCGG TTCTCACGAG TTATTACAAA 
AGCGACCACT TCAAGAGACG ACCGTACGAT CCGTACAACG TCTACACTAG 
TCCTAACGAA GCCATCCTCT GCTCCGACTC GTCCCAAAGC ATGTATGCTC 
AAATGCTATG TGGTCTCTTA ATGCGCCATG AAGTTCTCCG ACTCGGCGCA 
GTGTTTGCTT CCGGTCTCCT CCGTGCCATA AGCTTCCTCC AGAACAATTG 
GAAGGAACTT GCTCGTGATA TCTCAACCGG AACCCTAAGT TCTCGAATCT 
TCGATCCTGC CATTAAAAAC CGCATGTCCA AGATTTTGAC CAAACCTGAT 
CAAGAACTGG CTGAGTTTTT GGTTGGGGTT TGTTCACAAG AGAATTGGGA 
AGGGATAATC ACAAAGATAT GGCCTAACAC GAAGTACCTC GACGTGATTG 
TTACTGGAGC AATGGCTCAG TATATCCCGA CGTTGGAGTA CTATAGCGGT 
GGATTACCGA TGGCTTGCAC GATGTATGCT TCGTCCGAAA GTTATTTCGG 
GATTAACCTA AAGCCGATGT GTAAACCCTC GGAGGTTTCT TACACAATCA 
TGCCAAACAT GGCCTACTTT GAATTCCTCC CACATAATCA CGATGGAGAT 
GGAGCAGCAG AAGCATCATT AGACGAAACG TCACTTGTGG AGCTTGCTAA 
TGTTGAGGTA GGAAAAGAGT ACGAACTCGT GATCACGACC TACGCGGGGC 
TCTACCGTTA CAGAGTTGGC GACATTCTTC GTGTCACGGG GTTCCATAAT 
TCCGCTCCAC AGTTCAAATT CATACGGAGA AAGAATGTTC TGCTAAGCGT 
AGAATCCGAT AAAACCGACG AGGCTGAGCT ACAAAAAGCA GTGGAGAATG 
CGTCGAGGTT GTTTGCAGAG CAAGGAACAC GTGGGATCGA GTACACAAGC 
TACGCAGAAA CGAAGACTAT ACCGGGTCAT TACGTAATCT ACTGGGAGCT 
ACTTGGTAGA GATCAAAGCA ATGCTCTTAT GAGCGAAGAA GTCATGGCTA 
AGTGCTGTTT GGAGATGGAG GAATCTTTAA ACTCGGTTTA TAGACAAAGC 
CGGGTCGCTG ATAAATCGAT CGGCCCGCTT GGAGATACGT GTGGTACGGA 
ACGGTACGTT TGAGGAGCTC ATGGACTATG CCATCTCGAG AGGCGCATCG 
ATTAATCAGT ATAAGGTACC GAGGTGCGTG AGCTTCACAC CTATCATGGA 
GCTGCTTGAC TCTAGAGTTG TGTCTGCTCA TTTCAGCCCT TCGTTGCCGC 
ATTGGTCACC AGAACGACGT CGTTAGATAA AACTTTATAT GAAAGATATC 
AACCGGATGA TGTGCGGTTT TAGAATATAA AGCTCTGTTT CTGATGCTAA 
TTAAGACTCC CTGTTAGATT TCTTATTAGG CTTTGTGAAT CGTACAATAA 
AATTTGAAGT ACGTACCGAT GTTTTTTTCC TTCATCTTCT GTTGGAATCC 
AGCTAATAAC TAGCTTTGGT CCAAAAACCA GATATTTTTA AAATCAGCAT 
TTAATTATTA CTACGCCCTA AATTTTCTTT G

Gene models with high sequence identity

  1. AT4G37390.1 [+] show detail - Auxin-responsive GH3 family protein
    E-value: 0; Score: 99.91

 

InterPro Scan Digest

Program Description E-value
HMMPfam GH3 auxin-responsive promoter 1.5e-192
HMMPfam GH3 auxin-responsive promoter 5.2e-11

See the detailed result >

AT4G37390.1

Model type
Protein coding
Short Description
Auxin-responsive GH3 family protein
Curator Summary
Encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. May function as a negative component in auxin signaling by regulating auxin activity.
Computational Description
BRU6; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT1G59500.1); Has 1707 Blast hits to 1543 proteins in 239 species: Archae - 1; Bacteria - 597; Metazoa - 55; Fungi - 2; Plants - 674; Viruses - 0; Other Eukaryotes - 378 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-10-J18 introduced

  • F07503 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found