1. Home
  2. Full-length cDNAs
  3. RAFL09-10-L23

RAFL09-10-L23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05379)

full reading [+] show sequence

Nucleotide sequence: RAFL09-10-L23 - full reading 
TGGCAACACA AAAACATACA CACTACTAAT AAACCATGAA GCTTCTTATG 
CTCGCCTTTG TTTTTCTATT AGCTTTGGCG ACTTGTAAAG GTGACGAGTT 
TGTTTGTGAA GAGAACGAGC CATTCACATG TAACCAAACT AAACTTTTCA 
ACAGTGGCAA TTTCGAAAAA GGCTTCATCT TCGGTGTTGC ATCTTCTGCT 
TACCAGGTGG AAGGCGGTAG AGGCCGTGGA CTTAACGTTT GGGATAGCTT 
CACTCACCGA TTCCCAGAGA AAGGTGGAGC TGATTTGGGA AATGGAGACA 
CTACTTGTGA CTCATATACT CTTTGGCAGA AAGATATAGA CGTGATGGAC 
GAGCTCAACT CTACTGGCTA CAGATTCTCC ATTGCGTGGT CAAGACTCCT 
TCCAAAAGGA AAGAGGAGCA GGGGAGTGAA CCCAGGAGCT ATTAAGTACT 
ACAACGGTCT CATAGATGGC CTCGTCGCAA AGAATATGAC GCCCTTTGTT 
ACCCTCTTTC ATTGGGACCT TCCTCAAACA CTACAAGATG AATATAACGG 
TTTCTTGAAC AAAACGATCG TAGACGATTT CAAGGATTAC GCGGATCTAT 
GTTTCGAGTT ATTTGGTGAT AGGGTAAAGA ACTGGATCAC CATCAACCAG 
CTATACACAG TGCCTACTAG AGGATATGCA TTGGGAACAG ATGCACCCGG 
TCGATGTTCT CCTAAGATTG ACGTTAGATG TCCCGGCGGA AATTCGTCAA 
CAGAACCCTA TATTGTTGCA CATAACCAGC TTCTTGCTCA TGCAGCGGCC 
GTTGATGTTT ACAGGACGAA ATATAAGGAT GACCAAAAAG GTATGATTGG 
ACCAGTGATG ATAACTAGAT GGTTTCTTCC ATTTGATCAT AGTCAAGAGA 
GCAAAGATGC AACTGAGCGG GCTAAAATAT TTTTCCATGG ATGGTTCATG 
GGGCCTCTAA CAGAAGGTAA ATACCCAGAC ATCATGAGGG AATATGTTGG 
TGATCGGCTT CCAGAGTTCA GTGAAACAGA AGCCGCACTT GTAAAGGGTT 
CATATGATTT TCTTGGTCTC AACTATTACG TCACTCAATA CGCCCAAAAT 
AATCAGACGA TTGTTCCTTC GGACGTACAC ACTGCCTTGA TGGACTCACG 
CACAACTCTC ACATCTAAAA ATGCAACTGG TCATGCTCCT GGTCCACCGT 
TCAATGCAGC CAGTTACTAC TACCCAAAAG GCATTTACTA CGTAATGGAT 
TACTTCAAAA CCACTTACGG TGACCCTTTA ATATATGTCA CTGAGAATGG 
ATTTAGTACC GCAGGTGATG AGGACTTTGA GAAGGCTACT GCCGATTACA 
AGCGGATTGA TTATCTCTGT AGTCATCTCT GTTTCCTCAG TAAAGTCATC 
AAGGAGAAGA ATGTCAACGT GAAAGGATAT TTTGCTTGGT CTCTTGGGGA 
TAATTACGAA TTCTGTAACG GATTTACCGT CAGATTCGGA CTAAGTTACG 
TTGATTTCGC AAATATCACT GGTGATAGAG ACCTCAAAGC ATCTGGCAAA 
TGGTTCCAGA AGTTCATAAA CGTTACCGAC GAAGACTCTA CGAACCAAGA 
TCTACTCCGC TCAAGCGTCT CCTCCAAGAA CCGTGATCGG AAGAGTCTTG 
CAGATGCATG AAATATCCAA TCCACTATAT GTCCACCAAG ATCATCTTCA 
TGTTTCCTCT TTCTACTTGC TCCATAGATA AGGAGCTTTT TCTACCATAT 
GTATTAAAAT AAAATCCTAA TAAAAGATGA TCAATAATAA TAAAGACTTT 
GTTAT

Gene models with high sequence identity

  1. AT5G26000.1 [+] show detail - thioglucoside glucohydrolase 1
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
PatternScan Glycoside hydrolase, family 1, active site 0
PatternScan Glycoside hydrolase, family 1, active site 0
superfamily Glycoside hydrolase, catalytic core 2.9e-166
FPrintScan Glycoside hydrolase, family 1 6.8e-22
FPrintScan Glycoside hydrolase, family 1 6.8e-22
FPrintScan Glycoside hydrolase, family 1 6.8e-22
FPrintScan Glycoside hydrolase, family 1 6.8e-22
FPrintScan Glycoside hydrolase, family 1 6.8e-22
Gene3D Glycoside hydrolase, subgroup, catalytic core 7.9e-168
HMMPfam Glycoside hydrolase, family 1 4.6e-156
HMMPanther BETA-GLUCOSIDASE 6.2e-286
HMMPanther Glycoside hydrolase, family 1 6.2e-286

See the detailed result >

AT5G26000.1

Model type
Protein coding
Short Description
thioglucoside glucohydrolase 1
Curator Summary
member of Glycoside Hydrolase Family 1. encodes one of two known functional myrosinase enzymes in Arabidopsis. The enzyme catalyzes the hydrolysis of glucosinolates into compounds that are toxic to various microbes and herbivores.
Computational Description
thioglucoside glucohydrolase 1 (TGG1); FUNCTIONS IN: thioglucosidase activity, beta-glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: glucosinolate catabolic process; LOCATED IN: in 7 components; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: glucoside glucohydrolase 2 (TAIR:AT5G25980.2); Has 11138 Blast hits to 10810 proteins in 1458 species: Archae - 132; Bacteria - 7708; Metazoa - 712; Fungi - 191; Plants - 1422; Viruses - 0; Other Eukaryotes - 973 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-10-L23 introduced

  • F19605 - seed::increased size / seed::increased length
  • F23606 - Specific phenotypes were NOT observed.
  • F26442 - Specific phenotypes were NOT observed.
  • F28016 - rosette leaf::dark green / rosette leaf::abnormal / cauline leaf::abnormal / rosette leaf::decreased size / rosette leaf::epinastic / rosette leaf::abnormal / stem::increased thickness / cauline leaf::epinastic / cauline leaf::dark green

Mutant lines with disrupted or induced

6 mutant lines found