RAFL09-10-M09 - RIKEN Arabidopsis Genome Encyclopedia
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RAFL09-10-M09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17639)

full reading [+] show sequence

Nucleotide sequence: RAFL09-10-M09 - full reading
CCGATATCTG TCTCTCCGTC GTCAGAGAGT TTCTTTCGCC GATTTCGCAA 
AAACCCTATG GAGCTCCTCC GATCCAACTT GTCTAGGGTT CAGATCCCTG
AACCTACTCA TCGCATCTAC AAGCATGAGT GTTGCATCTC CTTCGATACT
CCGAGATCCG AAGGAGGATT GTTCGTTGAT ATGAATAGTT TTCTTGCTTT
CGGGAAGGAT TATGTTTCTT GGAACTATGA GAAGACTGGA AACCCTGTTT
ATCTTCATAT TAAGCAGACT AGGAAGTCTA TTCCCGAGGA TCGGCCTCTC
AAGAAACCGA CTCTGCTCGC TATAGGTGTT GATGGAGGCT TTGATAACAA
TGAGCCAGAG TACGAGGAGT CTTATAGCAT AGTCATACTT CCGGATTTTG
TTTCACTCCC GTTTCCTTCT GTTGAGCTAC CAGAGAAGGT GAGGATTGCT
GTCGATACTG TAGTGAATGC CGTTGGTGCT GAGCGGAAAG AGCAAGTTGC
AGCTTGGACA GCTGAGAAAA AGTTAATTAG TGAACATGCA TTGACACTGC
AGCAAATCAA GAGTGGCATT GTCATTCCTC CCTCTGGTTG GAAATGTTCT
AAGTGTGATA AGACGGAGAA TCTCTGGCTT AATCTTACCG ATGGAATGAT
TCTCTGTGGA AGAAAAAACT GGGATGGAAC TGGTGGAAAC AACCATGCTG
TTGAGCACTA CAAAGAGACA GCCTACCCTC TTGCTGTAAA GCTTGGAACT
ATCACTGCTG ACTTAGAAGC AGCAGATGTT TATTCCTATC CGGAAGATGA
CAGTGTTTTG GACCCGCTCC TGGCTGAGCA TCTGGCCCAT TTTGGAATTG
ACTTCTCGTC GATGCAGAAG ACTGAAATGA CAACTGCTGA AAGAGAACTT
GATCAAAATA CAAATTTTGA TTGGAACCGT ATACAAGAGA GTGGAAAAGA
ATTGGTGCCA GTTTTTGGAC CTGGATATAC CGGACTTGTC AATCTTGGGA
ACAGTTGCTA CTTGGCAGCT ACGATGCAGA TTGTTTTCTC TACCCATTCA
TTTATTTCAA GATACTTTTC ACATCAGAGC TTAAAGATGG CTTTTGAGAT
GGCTCCTGCT GATCCAACTT TGGACCTCAA TATGCAATTA ACAAAGCTTG
GACACGGCTT ACTATCTGGG AAGTACTCAA TGCCTGCAAC TCAGAAGGAT
GCTACAACTG GAGATCCTAG ACAAGAAGGA ATACCTCCTC GCATGTTCAA
AAACGTAATT GCCGCGAGCC ACGCAGAATT CTCTTCTATG AGACAGCAGG
ATGCTCTCGA CTTTTTCCTC CATCTGGTAG GCAAGGTTGA GCGTGCTAGC
AACACGACAC CAGATTTAGA CCCCTCGAGG AGCTTCAAGT TTGGAATAGA
AGAGAAGATC CTTTGTCCGT CTGGAAAGGT TGGATATAAT AAGAGGGAAG
ACTGTATTCT TTCTTTGAAC ATTCCGCTAC ATGAGGCAAC TAATAAAGAT
GAATTAGAAG CCTTTCACAA GCAAAAAGCA GGAAAAGGAT TGGAAGAGAA
TGATATGAGG TCAAGTGATG AAATAGTACG CCCACGAGTT CCTTTAGAAG
CCTGTCTAGC AAATTTTGCA TCATCAGAGC CGATTGAAGA CTACTATAGC
TCTGCTTTGA AGGGAATGAC AACAGCTATC AAGACAACTG GTTTGACATC
TTTCCCAGAT TATTTGGTCT TGCACATGCG GAAATTTGTT ATGGAGGAAG
GCTGGGTGCC AAAGAAACTT GATGTATACA TTGATGTTCC GGATGTTATT
GATATCAGCC ACATGCGTAG CAAAGGACTC CAACCTGGGG AAGAACTGTT
GCCAGATGGC GTTCCAGAAG AAGTGATGGA ATCAGCGCAG CCCGTGGCAA
ATGAGGAGAT AGTTGCACAG CTAGTCTCAA TGGGATTTAG CCAGCTTCAC
TGCCAGAAAG CTGCCATAAA TACTTCCAAT GCTGGGGTTG AAGAGGCAAT
GAACTGGTTA CTTTCTCACA TGGATGATCC AGACATCGAT GCACCAATCT
CCCACCAGAC ATCTGACATT GATCAATCAA GCGTTGATAC CTTACTCTCC
TTTGGTTTTG CTGAAGATGT TGCTCGGAAG GCACTAAAAG CCTCGGGAGG
AGACATTGAG AAAGCAACAG ACTGGGTATT CAACAACCCT AATGCATCTG
TTTCAGACAT GGATGTATCC TCTAGCAATT CAGCGCAGAC TCCGGCTCAA
AGTGGATTAC CAGATGGAGG AGGGAAATAC AAGCTGTTTG GAATAGTAAG
TCACATGGGA ACATCAGTGC ACTGTGGTCA TTACGTGGCT CACATATTGA
AAGAAGGCCG CTGGGTAATT TTCAATGACG ACAAAGTTGG TATCTCGACT
GATCCTCCTA AAGACATGGG TTATGTCTAC TTCTTTCAGC GGCTTGATTG
ATTCGATGGA GCCAGTTACA GAGACAAAAA CTAATCCTTT TTTTTTTTAA
ATAGAAACTT TTAAGGTCGA TAGGGTTTTT AACATTTGGA TTGAGGTGAC
CCATGTGACT AGTTTCGGTT CCAAAATCTT ACATGTGGAT TAGTAAATTT
GGTTCACTTG ATGATCTAAA AAAAAAA

Gene models with high sequence identity

  1. AT3G20630.1 [+] show detail - ubiquitin-specific protease 14
    E-value: 0; Score: 99.96

 

InterPro Scan Digest

Program Description E-value
HMMSmart Zinc finger, UBP-type 8.4e-24
HMMSmart Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 1.2e-07
HMMSmart Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 1.3e-09
PatternScan Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site 0
PatternScan Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site 0
HMMPIR Ubiquitinyl hydrolase 0
ProfileScan Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 11.414
ProfileScan Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote 14.234
ProfileScan Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 23.426
ProfileScan Zinc finger, UBP-type 17.914
superfamily Cysteine proteinases 6.7e-78
superfamily UBA-like 1.9e-09
Gene3D no description 2e-25
HMMPfam Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 1.1e-43
HMMPfam Ubiquitin-associated/translation elongation factor EF1B, N-terminal 6.1e-08
HMMPfam Ubiquitin-associated/translation elongation factor EF1B, N-terminal 4.3e-08
HMMPfam Zinc finger, UBP-type 8e-17
HMMPanther UBIQUITIN SPECIFIC PROTEASE 5/UBP14(YEAST) 4.9e-262
HMMPanther UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELAT 4.9e-262

See the detailed result >

AT3G20630.1

Model type
Protein coding
Short Description
ubiquitin-specific protease 14
Curator Summary
Encodes a ubiquitin-specific protease. Identical to TTN6. Loss of function mutations are embryo lethals, having development arrested at the preglobular/globular stage. Also involved in root responses to phosphate deficiency.
Computational Description
ubiquitin-specific protease 14 (UBP14); CONTAINS InterPro DOMAIN/s: Zinc finger, UBP-type (InterPro:IPR001607), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), UBA-like (InterPro:IPR009060), Ubiquitinyl hydrolase (InterPro:IPR016652); Has 2045 Blast hits to 1942 proteins in 227 species: Archae - 0; Bacteria - 2; Metazoa - 1042; Fungi - 463; Plants - 217; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-10-M09 introduced

  • F08033 - Specific phenotypes were NOT observed.
  • F15732 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

3 mutant lines found