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  3. RAFL09-10-N02

RAFL09-10-N02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05389)

full reading [+] show sequence

Nucleotide sequence: RAFL09-10-N02 - full reading 
AGTGGAGTGA AAAAACAAAT CCTAAGCAGT CCTAACCGAT CCCCGAAGCT 
AAAGATTCTT CACCTTCCCA AATAAAGCAA AACCTAGATC CGACATTGAA 
GGAAAAACCT TTTAGATCCA TCTCTGAAAA AAAACCAACC ATGAAGAGAG 
ATCATCATCA TCATCATCAT CAAGATAAGA AGACTATGAT GATGAATGAA 
GAAGACGACG GTAACGGCAT GGATGAGCTT CTAGCTGTTC TTGGTTACAA 
GGTTAGGTCA TCCGAAATGG CTGATGTTGC TCAGAAACTC GAGCAGCTTG 
AAGTTATGAT GTCTAATGTT CAAGAAGACG ATCTTTCTCA ACTCGCTACT 
GAGACTGTTC ACTATAATCC GGCGGAGCTT TACACGTGGC TTGATTCTAT 
GCTCACCGAC CTTAATCCTC CGTCGTCTAA CGCCGAGTAC GATCTTAAAG 
CTATTCCCGG TGACGCGATT CTCAATCAGT TCGCTATCGA TTCGGCTTCT 
TCGTCTAACC AAGGCGGCGG AGGAGATACG TATACTACAA ACAAGCGGTT 
GAAATGCTCA AACGGCGTCG TGGAAACCAC TACAGCGACG GCTGAGTCAA 
CTCGGCATGT TGTCCTGGTT GACTCGCAGG AGAACGGTGT GCGTCTCGTT 
CACGCGCTTT TGGCTTGCGC TGAAGCTGTT CAGAAAGAGA ATCTGACTGT 
AGCGGAAGCT CTGGTGAAGC AAATCGGATT CTTAGCCGTT TCTCAAATCG 
GAGCGATGAG AAAAGTCGCT ACTTACTTCG CCGAAGCTCT CGCGCGGCGG 
ATTTACCGTC TCTCTCCGTC GCAGAGTCCA ATCGACCACT CTCTCTCCGA 
TACTCTTCAG ATGCACTTCT ACGAGACTTG TCCTTATCTC AAGTTCGCTC 
ACTTCACGGC GAATCAAGCG ATTCTCGAAG CTTTTCAAGG GAAGAAAAGA 
GTTCATGTCA TTGATTTCTC TATGAGTCAA GGTCTTCAAT GGCCGGCGCT 
TATGCAGGCT CTTGCGCTTC GACCTGGTGG TCCTCCTGTT TTCCGGTTAA 
CCGGAATTGG TCCACCGGCA CCGGATAATT TCGATTATCT TCATGAAGTT 
GGGTGTAAGC TGGCTCATTT AGCTGAGGCG ATTCACGTTG AGTTTGAGTA 
CAGAGGATTT GTGGCTAACA CTTTAGCTGA TCTTGATGCT TCGATGCTTG 
AGCTTAGACC AAGTGAGATT GAATCTGTTG CGGTTAACTC TGTTTTCGAG 
CTTCACAAGC TCTTGGGACG ACCTGGTGCG ATCGATAAGG TTCTTGGTGT 
GGTGAATCAG ATTAAACCGG AGATTTTCAC TGTGGTTGAG CAGGAATCGA 
ACCATAATAG TCCGATTTTC TTAGATCGGT TTACTGAGTC GTTGCATTAT 
TACTCGACGT TGTTTGACTC GTTGGAAGGT GTACCGAGTG GTCAAGACAA 
GGTCATGTCG GAGGTTTACT TGGGTAAACA GATCTGCAAC GTTGTGGCTT 
GTGATGGACC TGACCGAGTT GAGCGTCATG AAACGTTGAG TCAGTGGAGG 
AACCGGTTCG GGTCTGCTGG GTTTGCGGCT GCACATATTG GTTCGAATGC 
GTTTAAGCAA GCGAGTATGC TTTTGGCTCT GTTCAACGGC GGTGAGGGTT 
ATCGGGTGGA GGAGAGTGAC GGCTGTCTCA TGTTGGGTTG GCACACACGA 
CCGCTCATAG CCACCTCGGC TTGGAAACTC TCCACCAATT AGATGGTGGC 
TCAATGAATT GATCTGTTGA ACCGGTTATG ATGATAGATT TCCGACCGAA 
GCCAAACTAA ATCCTACTGT TTTTCCCTTT GTCACTTGTT AAGATCTTAT 
CTTTCATTAT ATTAGGTAAT TGAAAAATTT TAATCTCGCT TTGGAGAGTT 
TTTTTTTTTT GCATGTGACA TTGGAGGGTA AATTGGATAG GCAGAAATAG 
AAGTATGTGT TACCAAGTAT GTGCAATTGG TTGAAATAAA ATCATCTTGA 
GTGTCACCAT CTATAAAATT CATTGTAATG ACTAATGAGC CTGATTAAAC 
TGTCTCTTAT GATAATGTGC TGATTCTCAT GAAAAAAAAA AAAAAAG

Gene models with high sequence identity

  1. AT1G14920.1 [+] show detail - GRAS family transcription factor family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Transcription factor GRAS 64.4
HMMPfam Transcription factor GRAS 6.8e-133
HMMPfam Transcriptional factor DELLA, N-terminal 1.1e-34
Coil coiled-coil 0

See the detailed result >

AT1G14920.1

Model type
Protein coding
Short Description
GRAS family transcription factor family protein
Curator Summary
Similar to a putative transcription factor and transcriptional coactivators. Repressor of GA responses and involved in gibberellic acid mediated signaling. Member of the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. GAI may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA.
Computational Description
GIBBERELLIC ACID INSENSITIVE (GAI); CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA, N-terminal (InterPro:IPR021914), Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor family protein (TAIR:AT2G01570.1); Has 2718 Blast hits to 2657 proteins in 311 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2714; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-10-N02 introduced

  • F09842 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

2 mutant lines found