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  3. RAFL09-11-F14

RAFL09-11-F14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07968)

full reading [+] show sequence

Nucleotide sequence: RAFL09-11-F14 - full reading 
GTTTGCTTTA CCCTTATTTG GCCATTCCTG TCTTCCACTT TGTCATCTTT 
TCCCTTTCTG ATGGGATCCG CCGCCGAACT CACGGAGCCC ACCACCGGGA 
CCGAGAAGCT TCACCAGCCA ATAGAAGTTG AAGAAGATGA CGAACAAATT 
GTTGATTTGG AGAGGAAAAC ATTCCGTCAT GGAAAGGGAC ACGATACTAG 
TGTGGACAGT AGTACAATCA CCAACACCAG CTCGTCGTCG TCTTCTAGCT 
TTTCCGGTGA TGGTGGAACG GAAGAGACCC CCGATTTCCA CAGCAACGGC 
GATGGAGAAC ATACCGATTT AGTAAATTTG GAGGTCCCGG AGCTAGAAAC 
TGAAATCGTA TTTCACCAAG AGCATGACGA CGGGAAGAAT TGCATCGTCT 
TCTTCGACGG AGAACAAGGT TCTGAGTCAG CTGGTGCCAT ACCTGATGCT 
CATGAGGAGT CTCAAACTGC TGACTTGAAT GGGGAGCAAA CGCAGTTAGA 
ACCTGAAAAC GGTTCAACTT CTGAGGATAA CGAAAGATCT CGTGAAATTG 
AAGAAGTACT AGATGGTGAT GTCTCTAAAG ACTTGGATGC TGTTGATCCA 
CTCGCTGGTG AGGTGATAGA GGAGGAGGTG GACTTCGAAG ATGTTGAATA 
TCATGATGTG GAGAATATGA TGGATAAGCA AGAGACACAT GATTTGTACT 
GTCCAAACTG CGATTCTTGC ATCACCAAAA AGGTTATCCT CAAAAGAAGG 
AAACGGAAGA TCCGTCGTCA TGAGCTGGGA GATTCAAAGC GGCCTCATTT 
GACTGAGCCT CTTTTTCATT CGGAAGACAA TTTGCCATCT CTAGATGGCG 
GTGAAAACTC TGCAAATGAG TCATTTGTCT TCAAGTGCTT GTCATGCTTT 
ACCATATTTA TTCCCAAAGG GGTGAGTTCA AAGCCGATTC CTCCCCGTCA 
AGGAGTTGAG GGGTTAAAGA TTCAGCCAAA CCCTCAAGTG GAAGCTACAG 
GCGATTCCAA TTGGTTCAGT TCAATATTTG GCCTCAACAA AAAGGAATCA 
GCTATTCAGC AAGGTGGGGC ATCATCTAGT GTCTTGGAAG CTAATCCGCC 
ACCACGTGAG TCCATTGTCC CAGTAGTTAA TCCATCGCGT GGTAACCTAA 
GTCCTATGCG AAAGGATACG ACAGGCTCAG CCGTTGTTCA GCCTGATGCA 
GCCACTTCGA TTCAAGTTGC AAAATCAAAC GATACAAGCG AAATTGTAAA 
CAATGGAGCT ATTGTTGGAG ACGGGCAAAA GTTTCTGGCT CCTATGGTGG 
AGGAGCAAAC ACAGCAAAAG ATTGACAATG ATGATTCTAG TACAGCAGAC 
GGGAATCACA CGTCAGACAA AGGACGTCTC TCCCCAATTC AACCATCTCA 
TGGCATGAGT ATACTAAACA CAGTGACTAA CGGACCCGAC GGATTGAAAG 
TAGAAACTAC AATTCATGAA GAAGGTGCCC CTCTTCTGTT TGAAGGAAAA 
GACACTCCTG ACACAAGCAC GGCAGATTTT GGTCTGACCA AAGTAACAGG 
TGTGATGGAC ACAGGTGACA GAGGAGTTAT TACCGGTCCA GCAAATCCTG 
AAATTGATAT TTCAGCAGGG AATTTGCTGG AAGAAGGGTC TCTAAGGGAA 
CCGTTAATGA GACGAGTTGT TGTTCAAGGA CGTAAACTGG AAATCTTGAA 
AAGCATTGTC TACGGAGGTC TACTAGAAGC CATCACAAGC CTTGGTGTTA 
TTTCATCTGC CGCTGGTTCT GGTGCTTCAA TGTTGAATAT TCTGGTCTTG 
GGGCTTGCAA ACTTGCTTGG CGGGCTTATT CTTATTATTC ATAATCTCCA 
AGAACTTAGA GAGGAGGAAC CCATAAGAAC AACAACAGAA GATAACCAGA 
CTAACGGTAG AGAAGAAGAA GAAGGTCGGT ATAAGCGACT CCTTGGACGA 
AGAGAAAATT TCACACTTCA CGCAACAGTC GCAATCTTAT CCTTCATAAT 
CACCGGAATA CTCCCTCCTG TAGTCTACTA TTTCTCATTC AGTGAAAAAC 
ACAACAAAGA CTACAAAGTT GCTTCAGTTT TCGGGGCATC TCTATTCTGC 
ATCGTCTTGC TCGCCATAGC CAAAGCTCAT GTGAGGTACC CGAGAGGCAG 
CTACCTGAAG AGCATTCTGT ACTACGGGTC AATTGCTGTA TCGGTGTCGG 
GGATTTCTTA TGTGGTTGGT AACTTTCTGG AACAGTTGCT TGAGAAGCAT 
GGATGGTCTG ATGGATCGGA AACACCTGTG GGACAGATGA TGCTTTCATC 
ACTTATGGGA AGAAAAGCCG GCTTTGGATA CTCATCATCG TACTGAAACT 
GAATCTTGCC TGGAGAATGA TCCAAACTGA AACTTGCTGC TTTTCTCTTT 
TACTCTGCTT TTGTGAGCTC TCGTTCCAAA TCTTTGTTGT CGGCAAATCT 
TTGTTGTGAC TTGTGAGTGT AGAAGAAAGT CGTTTCCACT TGTAGAATAA 
ACTAAAATAA GCATAACATA ATAATGATGG AAGATCTGTG CCTTTTAAT

Gene models with high sequence identity

  1. AT4G27870.1 [+] show detail - Vacuolar iron transporter (VIT) family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT4G27870.1

Model type
Protein coding
Short Description
Vacuolar iron transporter (VIT) family protein
Computational Description
Vacuolar iron transporter (VIT) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); BEST Arabidopsis thaliana protein match is: vacuolar iron transporter (VIT) family protein (TAIR:AT4G27860.2); Has 285 Blast hits to 248 proteins in 70 species: Archae - 2; Bacteria - 30; Metazoa - 59; Fungi - 10; Plants - 112; Viruses - 4; Other Eukaryotes - 68 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-11-F14 introduced

  • F07215 - seed::increased size / seed::increased length
  • F20934 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found