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Full-length cDNAs
RAFL09-11-I21

RAFL09-11-I21

RIKEN Arabidopsis Full-length cDNAs

AGGAACAACA ATCACAGAAC AAGACGGCAC AAGCAAAAAA AGGCTGAAGA 
ACCTACTACT ACCACTCTCG TTACACCGGA AAAGCTACCT TCTCCGAGCC 
TCACGCCTTC TGAAGTATCT GAATCTACTC AAGATGCCCT ACCGACAGAG 
ACAGAAACTC TGGAGAAAGT GACTGAGACT AATCCACCGG AAACTGCAGA 
TACCACCACC AAGCCAGAAG AAGAAACCGC GGCAGAGCAT CATCCACCGA 
CAGTGACGGA AACAGAAACT GCATCGACGG AGAAACAAGA GGTTAAAGAC 
GAAGCATCGC AGAAAGAAGT AGCTGAAGAG AAAAAGAGTA TGATTCCACA 
GAATCTTGGT TCATTCAAAG AAGAAAGCAG CAAACTTTCT GATCTATCTA 
ATTCCGAGAA GAAATCACTC GATGAACTAA AACATCTAGT TCGAGAAGCT 
CTAGACAATC ACCAATTCAC CAACACACCA GAAGAAGTCA AGATTTGGGG 
GATTCCATTA CTTGAAGACG ATAGAAGCGA CGTCGTTTTG TTAAAATTCC 
TAAGAGCTAG GGAGTTCAAG GTGAAAGATT CGTTTGCTAT GCTCAAGAAC 
ACAATCAAGT GGAGAAAGGA GTTCAAGATC GATGAATTGG TCGAGGAAGA 
TCTTGTGGAT GATCTTGACA AGGTTGTGTT TATGCATGGA CATGACCGAG 
AAGGTCACCC TGTTTGTTAC AATGTCTATG GTGAGTTTCA GAACAAGGAG 
CTTTATAATA AGACGTTTTC TGATGAGGAA AAGAGGAAAC ATTTCTTGAG 
GACTAGGATT CAGTTCTTGG AGAGGAGTAT AAGGAAGCTA GATTTTAGCT 
CTGGTGGGGT TTCTACTATT TTTCAGGTTA ATGATATGAA GAATTCTCCG 
GGGTTAGGGA AGAAAGAGCT TAGATCAGCT ACTAAGCAAG CTGTTGAGTT 
GCTTCAGGAC AATTACCCTG AGTTTGTCTT CAAACAGGCT TTTATCAATG 
TTCCTTGGTG GTACCTTGTG TTTTATACTG TGATTGGTCC GTTCATGACA 
CCAAGATCAA AGAGCAAGCT TGTGTTTGCT GGTCCTTCGC GTTCAGCTGA 
AACCCTATTC AAATACATAT CACCCGAGCA AGTTCCAGTA CAATATGGTG 
GATTGAGTGT TGATCCTTGC GACTGCAATC CAGACTTTTC GTTGGAAGAT 
TCAGCCTCTG AGATCACTGT TAAGCCCGGA ACAAAACAAA CTGTTGAGAT 
CATAATCTAT GAGAAATGTG AACTTGTGTG GGAGATAAGG GTAACTGGAT 
GGGAAGTGAG CTACAAGGCT GAATTTGTGC CGGAAGAGAA AGATGCTTAC 
ACGGTGGTTA TACAAAAACC GAGGAAGATG AGACCATCCG ATGAACCGGT 
GTTAACCCAT AGCTTCAAAG TGAATGAGCT TGGCAAGGTT TTACTCACAG 
TAGACAACCC AACCTCTAAG AAGAAGAAGC TCGTTTACAG GTTCAATGTC 
AAACCTCTCT AAGTTTTAAG AACCAAATGA AAAATGTTTC CAAACTTTGT 
TTTATTTTAC AAAAAATGTT GTTTCTAGAC TTTTGTTTTT CTTGAAACAG 
AAGTGAGATA TCTTATGTGT GTTTGTATAT GTGAGTGTTT ACTTTATCAT 
ATCATATAAA TTATGTGTGG TTTATTTTGC TCTTGTAATC AATCATTTGT 
GGAGAATATA TTACTACATG ACTTTATGAA ATAAAGATCT TTAAATCAC

Gene models with high sequence identity

AT1G72160.1 [+] show detail - Sec14p-like phosphatidylinositol transfer family protein
E-value: 0; Score: 99.89

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Cellular retinaldehyde-binding/triple function, C-terminal	19.65
ProfileScan	GOLD	10.96
superfamily	Cellular retinaldehyde-binding/triple function, C-terminal	5.7e-37
superfamily	Phosphatidylinositol transfer protein-like, N-terminal	3.7e-16
HMMPfam	Cellular retinaldehyde-binding/triple function, C-terminal	1.3e-23
HMMPfam	Cellular retinaldehyde-binding/triple function, N-terminal	0.0000000055
Coil	coiled-coil	0
HMMPanther	SEC14 CYTOSOLIC FACTOR-RELATED	6.6e-147
HMMPanther	SEC14 RELATED PROTEIN	6.6e-147
Gene3D	no description	0.0000000017
Gene3D	Cellular retinaldehyde-binding/triple function, C-terminal	1.1e-42
HMMSmart	Cellular retinaldehyde-binding/triple function, C-terminal	9.8e-36

See the detailed result >

AT1G72160.1

Model type: Protein coding
Short Description: Sec14p-like phosphatidylinositol transfer family protein
Computational Description: Sec14p-like phosphatidylinositol transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), GOLD (InterPro:IPR009038), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT4G09160.1); Has 4473 Blast hits to 3903 proteins in 364 species: Archae - 35; Bacteria - 264; Metazoa - 1504; Fungi - 917; Plants - 883; Viruses - 13; Other Eukaryotes - 857 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL09-11-I21 introduced

F11238 - rosette leaf::present in greater numbers in organism / cauline leaf::decreased size / cauline leaf::present in fewer numbers in organism / stem::decreased thickness / cauline leaf::abnormal / stem::abnormal / stem::abnormal

Mutant lines with disrupted or induced

2 mutant lines found