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  3. RAFL09-11-J07

RAFL09-11-J07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05405)

full reading [+] show sequence

Nucleotide sequence: RAFL09-11-J07 - full reading 
CTCACTACTC TCTCTCTCTC TCTCCTCTGT TCTAATTCTC TAGGAACAGA 
GTAAAAGACT TTGGCTCAGC TTCTGCCTCT CCAATGGCGG TTCTTCCGAC 
ATGGCTTTTA GCAATGATGT GTTTACTCTT CTTCGTCGGA GCTATGGAGA 
ACACTACACA CGACAACATC TCTTCTCTCC CTAGATCCGA CGAAACCGAA 
TGGAACCAAC ACGCAGTGAC GAATCCAGAT GAAGTAGCGG ACGAAGTTCT 
CGCCTTGACA GAAATGAGTG TGAGAAACCA TACCGAGAGG AGGAAACTAG 
GTTACTTTAC TTGCGGAACA GGAAACCCTA TCGACGATTG TTGGCGATGT 
GACCCCAATT GGCACAAGAA CCGTAAACGC CTAGCGGATT GCGGTATCGG 
ATTTGGAAGA AACGCGATCG GTGGTCGTGA TGGACGATTC TACGTAGTCA 
CTGACCCAAG AGACGACAAT CCGGTTAACC CTAGACCGGG GACTTTACGT 
CACGCCGTGA TCCAAGACCG ACCACTATGG ATCGTTTTCA AACGTGACAT 
GGTGATTCAG CTAAAACAAG AGCTTATCGT TAACAGTTTC AAAACGATCG 
ATGGACGTGG CGCAAACGTT CACATTGCTA ACGGTGGTTG CATCACGATT 
CAGTTTGTGA CGAATGTGAT CGTTCACGGA TTGCATATTC ATGACTGTAA 
ACCAACTGGT AACGCTATGG TGAGAAGCTC AGAGACGCAT TTTGGGTGGA 
GGACAATGGC AGATGGTGAC GCGATTTCGA TCTTTGGATC GAGTCATGTA 
TGGATTGATC ATAACTCGTT GTCCCATTGC GCTGATGGGC TTGTGGACGC 
AGTCATGGGC TCAACCGCGA TTACCATCTC TAACAACCAC TTAACTCACC 
ATAACGAGGT TATGTTGCTA GGACATAGTG ACTCGTACAT GAGGGACAAA 
GCTATGCAAG TGACCATTGC TTACAATCAT TTTGGAGTCG GACTTATTCA 
AAGAATGCCG AGGTGTCGAC ACGGGTACTT CCATGTTGTT AACAACGACT 
ACACTCACTG GGAAATGTAC GCAATAGGTG GTAGCGCAAA CCCGACAATC 
AACAGTCAAG GAAACCGCTA TGCCGCCCCA AAAAACCCCT TTGCTAAAGA 
GGTGACGAAG AGAGTGGACA CACCGGCTAG TCATTGGAAA GGATGGAATT 
GGAGATCGGA AGGAGATTTG CTTCAGAACG GTGCTTACTT CACTTCTTCA 
GGAGCCGCCG CGTCTGGCAG CTACGCACGT GCCTCCAGCC TTTCCGCGAA 
ATCTTCGTCA TTGGTCGGAC ACATTACTTC CGACGCTGGA GCTCTACCTT 
GTCGCAGAGG ACGTCAATGT TCCTCATAGT TACTACCCCA CCACCAAAAT 
TCAAAACCAT CTTCCATTAT ATTCAGACAA AAGTGTAAAT TTACACACAT 
TTGTCATTT

Gene models with high sequence identity

  1. AT1G04680.1 [+] show detail - Pectin lyase-like superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Pectin lyase fold/virulence factor 7.6e-111
Gene3D Pectin lyase fold 7.6e-104
FPrintScan AmbAllergen 2e-83
FPrintScan AmbAllergen 2e-83
FPrintScan AmbAllergen 2e-83
FPrintScan AmbAllergen 2e-83
FPrintScan AmbAllergen 2e-83
FPrintScan AmbAllergen 2e-83
FPrintScan AmbAllergen 2e-83
FPrintScan AmbAllergen 2e-83
HMMPfam Pectate lyase/Amb allergen 1.3e-61
HMMSmart Pectate lyase/Amb allergen 1.6e-103

See the detailed result >

AT1G04680.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G13710.1); Has 1635 Blast hits to 1625 proteins in 268 species: Archae - 0; Bacteria - 682; Metazoa - 0; Fungi - 239; Plants - 706; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-11-J07 introduced

  • F28818 - rosette leaf::increased size / stem::increased thickness / stem::abnormal / stem::present in fewer numbers in organism / stem::abnormal

Mutant lines with disrupted or induced

2 mutant lines found