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Full-length cDNAs
RAFL09-11-K06

RAFL09-11-K06

RIKEN Arabidopsis Full-length cDNAs

GATCTCAGAT CTCTCCCTCC CTCTTTCTCC GATCTCAGAT CCATTCAACA 
ATCTACAAAG AAGATGGAAC CAGTCTCTTC ATGGGGTAAC ACCTCTCTCG 
TCTCCGTAGA TCCAGAGATC CACGACCTAA TCGAGAAGGA GAAACGTCGG 
CAATGTCGAG GAATCGAACT TATCGCTTCC GAGAATTTCA CTTCCTTCGC 
CGTCATCGAA GCTCTCGGAA GTGCCTTAAC CAACAAATAC TCCGAAGGTA 
TTCCTGGTAA TCGTTATTAC GGAGGTAACG AATTCATCGA TGAGATCGAG 
AATCTTTGCC GTTCAAGAGC TCTCGAAGCT TTCCATTGTG ATCCAGCAGC 
GTGGGGCGTT AATGTTCAGC CGTATTCTGG ATCTCCGGCA AATTTCGCTG 
CTTACACGGC TTTGCTTCAG CCTCACGATC GTATCATGGG GCTTGATTTG 
CCTTCAGGTG GTCATTTGAC TCATGGTTAC TATACATCTG GTGGTAAGAA 
GATCTCTGCG ACTTCGATCT ACTTTGAGAG TCTTCCGTAT AAGGTGAATT 
TCACCACTGG TTACATTGAT TACGATAAGC TTGAAGAGAA GGCGTTGGAT 
TTCAGGCCTA AGTTGCTTAT CTGTGGTGGT AGTGCGTATC CTAGGGATTG 
GGATTACGCT AGATTTAGAG CTATTGCTGA TAAGGTTGGA GCTCTTTTGC 
TTTGTGACAT GGCTCACATC AGTGGTCTCG TTGCTGCTCA GGAAGCTGCA 
AACCCATTTG AGTACTGTGA CGTTGTGACA ACCACAACCC ACAAGAGTTT 
GAGGGGTCCA AGGGCTGGTA TGATTTTCTA CAGGAAGGGT CCAAAACCAC 
CAAAGAAGGG TCAACCCGAG GGTGCAGTCT ATGATTTTGA GGACAAAATC 
AACTTTGCTG TATTCCCTGC GCTTCAAGGT GGTCCTCACA ATCACCAGAT 
TGGTGCTCTA GCTGTTGCGT TGAAGCAGGC TAATACTCCT GGGTTCAAGG 
TCTACGCAAA ACAAGTGAAA GCCAATGCTG TTGCCCTTGG AAACTACCTA 
ATGAGCAAGG GTTACCAGAT TGTGACCAAT GGAACTGAGA ACCACCTTGT 
TCTCTGGGAT CTTCGCCCTC TTGGATTGAC CGGAAACAAG GTTGAGAAGC 
TCTGCGATCT GTGCAGCATT ACATTGAACA AGAACGCAGT ATTTGGAGAC 
AGTAGTGCTC TTGCTCCTGG AGGTGTAAGA ATCGGTGCAC CCGCGATGAC 
ATCGAGAGGA TTGGTGGAGA AGGACTTTGA GCAGATAGGA GAATTCCTGA 
GCCGTGCAGT GACACTGACG TTGGACATCC AAAAGACATA CGGTAAGTTG 
TTGAAGGACT TCAACAAGGG TTTGGTGAAC AACAAAGATC TCGATCAGCT 
CAAGGCTGAT GTCGAGAAGT TCTCGGCGTC TTATGAGATG CCTGGATTCC 
TCATGTCTGA GATGAAGTAC AAGGATTAGA GATCTTTCTC TATATGCAAG 
AGTAATCTTC TATTATTATC TACCATATAT ATAAAATATG CTTTTGTAGG 
ATCGCCTTAA AGGCGAAGAG ATGAAGATGC AAACAGTAAA AAAAAAGGGT 
TTTCTTTTCA GCTATTTCTT CTTGAATGTT TTTTTTCTTT TTCTTTTGGT 
TTCTTATTGA AATTGTTGTA TTTTTGTTGG CTTTTTTCTA ATAATATCAG 
CGAGTTTTTC CT

Gene models with high sequence identity

AT4G13930.1 [+] show detail - serine hydroxymethyltransferase 4
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
superfamily	Pyridoxal phosphate-dependent transferase, major domain	3.4e-175
Gene3D	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	2.1e-102
HMMPIR	Serine hydroxymethyltransferase	1.5e-237
HMMPfam	Serine hydroxymethyltransferase	3.2e-187
PatternScan	Serine hydroxymethyltransferase, pyridoxal phosphate binding site	0
HMMPanther	Serine hydroxymethyltransferase	0

See the detailed result >

AT4G13930.1

Model type: Protein coding
Short Description: serine hydroxymethyltransferase 4
Curator Summary: Encodes a serine hydroxymethyltransferase maximally expressed in root
Computational Description: serine hydroxymethyltransferase 4 (SHM4); FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity; INVOLVED IN: response to cadmium ion, glycine metabolic process, L-serine metabolic process; LOCATED IN: cytosol, plasma membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Serine hydroxymethyltransferase, pyridoxal phosphate binding site (InterPro:IPR019798), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Serine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT4G13890.1); Has 11689 Blast hits to 11661 proteins in 2862 species: Archae - 259; Bacteria - 6437; Metazoa - 341; Fungi - 289; Plants - 375; Viruses - 6; Other Eukaryotes - 3982 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL09-11-K06 introduced

F01049 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found