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  3. RAFL09-11-O13

RAFL09-11-O13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01702)

full reading [+] show sequence

Nucleotide sequence: RAFL09-11-O13 - full reading 
GCACTCGCCA TGGTGTCTCA TCTTCAATGT ATGGCATCCA CATTGTTTAC 
TTGAGGTACA AGCAAAACGT CTAAGCTCGT CGACCTCCTC TTAATGGCTT 
CAAGTTCAAC TTCATTCCCG TTAACCACCG CGCCACCGCA GGGTGTCAGG 
TTTAACCGGA GAAAACCGAG GTTAACCGTG TGGGCTAAGC AAACGGCGTT 
TCAACTCGGG AAAACGAAGG GTGATGATGA CTCGGAGGGG AAACAAAAAG 
GGAAGAACCC GTTCCAGTTT GATTTCGGTA AGTTACCGGA CATGAAGTCA 
CTGATACCGG TTGTGACGAA TCCTTCTACC GGTTTAGTGT TTGGTAATAA 
CAGAAAGAAA GATCCTGGTA CTATTTTTGT GGCTGGTGCT ACGGGACAAG 
CTGGTATACG CATAGCTCAA ACGCTCTTAC AACGAGGATT CAGTGTTCGA 
GCCGGTGTTC CTGACCTTGG AGCTGCCCAG GACCTAGCTC GTGTCGCGGC 
TACTTACAAG ATTTTATCAA ATGATGAAGT CAAGAGGCTA AACGCAGTTC 
AATCCCCCTT CCAAGACGCT GAATCAATAG CAAAAGCGAT TGGAAACGCA 
ACCAAAGTTG TTGTTACGGT CGGGGCAACA GAGAATGGTC CGGACGCCCA 
AGTTTCGACC TCAGACGCAT TGCTCGTGGT CCAAGCAGCT GAGCTAGCCG 
GCGTAAGCCA CGTGGCGATA GTCTACGACG GCACCATCAG CGGGTCCACA 
TACAACGTGC TCGACGGGAT TACTTCGTTT TTCGGCAATC TTTTCGCAAA 
ATCTCAGCCA TTGACTATCT CTGACCTCAT CGAGAAAGTA GCTCAAACCG 
ACGTGGCCTA CACACTCATA AAGACGAGTT TGACGGAGGA TTTCTCTCCG 
GAGAAAGCTT ATAACGTCGT CGTTTCAGCT GAAGGGAGTA ACAGCGGCAG 
TGGCAGTAGT TCGTCCGAGG CCTACAAAGT AATGTAATGT TCCGAAGTTG 
AAGATTGCGT CGCTGGTTGC AGACATTTTT GCGAATACGG CCGTGGCAGA 
AAATAAGGTG GTGGAAGTTT CTACAGATCC ATCAGCACCA TCGCGGCCAG 
TGGACGAGCT TTTCAGTGTA ATCCCGGAAG ATGGGAGGAG AAAAGTGTAC 
GCAGATGCGA TCGCAAGGGA AAGAGCAGAG GAAGAAGCTA AAGTTGCAGC 
TGACAAAGCT CGAGAGGCAG CAGAAGCAGC GAAAGAGTTT GAGAAGCAAA 
TGCAAAAGCT CTCTGAGAAA GAAGCAGAAG CTGCAAGCTT AGCTGAGGAT 
GCGCAGCAGA AAGCAGATGC CGTGGGAGTC ACAGTGGACG GTTTATTTAA 
CAAGGCGAAA GATATCAGCT CAGGTCTCTC CTGGAATAAA CTCGGCTCTC 
AGTTCGCAAC TGCGATTCAG AACGCTTCAG AGACGCCTAA AGTACAGGTT 
GCTACGGTCA GAGGACAAGC AAAAGCGAGA AACTTGCCAC CCAAGAAAGC 
AGTGGTGAAG CAGAGACCAT CATCTCCGTT TGCATCCAAA CCGAAAGAAG 
AACGTCCGAA GAAGCCGGAG AAAGAGGTGA GGAAAGTGTT CGGAGGATTG 
TTTAAGCAAG AGACCATCTA CATCGACGAT GATTGAAAAG GCCATATGCG 
ATGTCCTTTT GAAGTTCCGT ACAGTTTCCT TTTTTCTCTT TCCTTCTGTT 
TCAAGTTAAA ATTCTGTAAT CGTATGACAA AATTATACAT AAAAAACCAT 
CATTCTCTCT CT

Gene models with high sequence identity

  1. AT3G46780.1 [+] show detail - plastid transcriptionally active 16
    E-value: 0; Score: 99.43

 

InterPro Scan Digest

Program Description E-value
Gene3D NAD(P)-binding domain 0.000000000015
Coil coiled-coil 0
Coil coiled-coil 0
superfamily NAD(P)-binding domain 0.0000000000045
HMMPfam NmrA 0.000000022

See the detailed result >

AT3G46780.1

Model type
Protein coding
Short Description
plastid transcriptionally active 16
Computational Description
plastid transcriptionally active 16 (PTAC16); FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G18890.1); Has 1243 Blast hits to 1093 proteins in 359 species: Archae - 5; Bacteria - 555; Metazoa - 73; Fungi - 75; Plants - 168; Viruses - 22; Other Eukaryotes - 345 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-11-O13 introduced

  • F08311 - Specific phenotypes were NOT observed.
  • F17521 - Specific phenotypes were NOT observed.
  • F28151 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found