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  3. RAFL09-12-B08

RAFL09-12-B08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01653)

full reading [+] show sequence

Nucleotide sequence: RAFL09-12-B08 - full reading 
ATGATCTTCA AGAAGAAAGA TAAACGACTC CGAAGAAAGA TTTAAGTTAT 
TGTTGTTCAT ACAAAAAGAA GGGTTTGCTT TCAGTTTCCG GAGTATAAGA 
AAAGATGTTC GAGCCAAATA TGCTGCTTGC GGCTATGAAC AACGCAGACA 
GCAATAACCA CAACTACAAC CATGAAGACA ACAATAATGA AGGATTTCTT 
CGGGACGATG AATTCGACAG TCCGAATACT AAATCGGGAA GTGAGAATCA 
AGAAGGAGGA TCAGGAAACG ACCAAGATCC TCTTCATCCT AACAAGAAGA 
AACGATATCA TCGACACACC CAACTTCAGA TCCAGGAGAT GGAAGCGTTC 
TTCAAAGAGT GTCCTCACCC AGATGACAAG CAAAGGAAAC AGCTAAGCCG 
TGAATTGAAT TTGGAACCTC TTCAGGTCAA ATTCTGGTTC CAAAACAAAC 
GTACCCAAAT GAAGAATCAT CACGAGCGGC ATGAGAACTC ACATCTTCGG 
GCGGAGAACG AAAAGCTTCG AAACGACAAC CTAAGATATC GAGAGGCTCT 
TGCAAATGCT TCGTGTCCTA ATTGTGGTGG TCCAACAGCT ATCGGAGAAA 
TGTCATTCGA CGAACACCAA CTCCGTCTCG AAAATGCTCG ATTAAGGGAA 
GAGATAGACC GTATATCCGC AATCGCAGCT AAATACGTAG GCAAGCCAGT 
CTCAAACTAT CCACTTATGT CTCCTCCTCC TCTTCCTCCA CGTCCACTAG 
AACTCGCCAT GGGAAATATT GGAGGAGAAG CTTATGGAAA CAATCCAAAC 
GATCTCCTTA AGTCCATCAC TGCACCAACA GAATCTGACA AACCTGTCAT 
CATCGACTTA TCCGTGGCTG CAATGGAAGA GCTCATGAGG ATGGTTCAAG 
TAGACGAGCC TCTGTGGAAG AGTTTGGTTT TAGACGAAGA AGAATATGCA 
AGGACCTTTC CTAGAGGGAT CGGACCTAGA CCGGCTGGAT ATAGATCAGA 
AGCTTCGCGA GAAAGCGCGG TTGTGATCAT GAATCATGTT AACATCGTTG 
AGATTCTCAT GGATGTGAAT CAATGGTCGA CGATTTTCGC GGGGATGGTT 
TCTAGAGCAA TGACATTAGC GGTTTTATCG ACAGGAGTTG CAGGAAACTA 
TAATGGAGCT CTTCAAGTGA TGAGTGCAGA GTTTCAAGTT CCATCTCCAT 
TAGTCCCAAC ACGTGAAACC TATTTCGCAC GTTACTGTAA ACAACAAGGA 
GATGGTTCGT GGGCGGTTGT CGATATTTCG TTGGATAGTC TCCAACCAAA 
TCCCCCGGCT AGATGCAGGC GGCGAGCTTC AGGATGTTTG ATTCAAGAAT 
TGCCAAATGG ATATTCTAAG GTGACTTGGG TGGAGCATGT GGAAGTTGAT 
GACAGAGGAG TTCATAACTT ATACAAACAC ATGGTTAGTA CTGGTCATGC 
CTTTGGTGCT AAACGCTGGG TAGCCATTCT TGACCGCCAA TGCGAGCGGT 
TAGCTAGTGT CATGGCTACA AACATTTCCT CTGGAGAAGT TGGCGTGATA 
ACCAACCAAG AAGGGAGGAG GAGTATGCTG AAATTGGCAG AGCGGATGGT 
TATAAGCTTT TGTGCAGGAG TGAGTGCTTC AACCGCTCAC ACGTGGACTA 
CATTGTCCGG TACAGGAGCT GAAGATGTTA GAGTGATGAC TAGGAAGAGT 
GTGGATGATC CAGGAAGGCC TCCTGGTATT GTTCTTAGTG CAGCCACTTC 
TTTTTGGATC CCTGTTCCTC CAAAGCGAGT CTTTGACTTC CTCAGAGACG 
AGAATTCAAG AAATGAGTGG GATATTCTGT CTAATGGAGG AGTTGTGCAA 
GAAATGGCAC ATATTGCTAA CGGGAGGGAT ACCGGAAACT GTGTTTCTCT 
TCTTCGGGTA AATAGTGCAA ACTCTAGCCA GAGCAATATG CTGATCCTAC 
AAGAGAGCTG CACTGATCCT ACAGCTTCCT TTGTGATCTA TGCTCCAGTC 
GATATTGTAG CTATGAACAT AGTGCTTAAT GGAGGTGATC CAGACTATGT 
GGCTCTGCTT CCATCAGGTT TTGCTATTCT TCCTGATGGT AATGCCAATA 
GTGGAGCCCC TGGAGGAGAT GGAGGGTCGC TCTTGACTGT TGCTTTTCAG 
ATTCTGGTTG ACTCAGTTCC TACGGCTAAG CTGTCTCTTG GCTCTGTTGC 
AACTGTCAAC AATCTAATAG CTTGCACTGT TGAGAGAATC AAAGCTTCAA 
TGTCTTGTGA GACTGCTTGA AAACCATCCA TTAGGAAATA ACAAAATGGT 
GATGATGGAA AAAAGAGAGA GATTTCAGTT TGAGAAAAGC GGAGGAGTCA 
AGATCGAACC TCACAAGAGA ATACCATTGA GTGTTTGTTA GTGTTAAGTT 
TTGGTCTGCT TATTTGATGA AACTAAGCAG TGAAAAACTT TTTACTTGAA 
AGTGAATATG TAGATGGTTT TACGAGGTTC GGGAATTTGA CTTCCCCTGT 
CACATACTGA ATTAGACAAA AACAAAAACT AGGTTAGAAA GAATGCTTTC 
GGATTTCTTT TTGTGTTACA GTTACTGTTT TTCTTTCCTT CTTGTGGTTA 
GATGGACCAT CATCAGGAAT TTGGAGTTTG TCTTTCTTTT GTATAAATAT 
CTTATACAAG TATTTTGGTA CTTTTGT

Gene models with high sequence identity

  1. AT1G05230.1 [+] show detail - homeodomain GLABROUS 2
    E-value: 0; Score: 99.96

 

InterPro Scan Digest

Program Description E-value
superfamily Homeodomain-like 1.5e-19
PatternScan Homeobox, conserved site 0
HMMSmart Homeobox 6.5e-18
HMMSmart Lipid-binding START 2e-62
Gene3D Homeodomain-related 8.9e-17
HMMPanther PAIRED-LIKE HOMEOBOX PROTEIN PEPP 3.7e-13
HMMPanther HOMEOBOX PROTEIN 3.7e-13
ProfileScan Homeobox 16.374
ProfileScan Lipid-binding START 41.633
HMMPfam Lipid-binding START 5.7e-67
HMMPfam Homeobox 9.7e-17
Coil coiled-coil 0

See the detailed result >

AT1G05230.1

Model type
Protein coding
Short Description
homeodomain GLABROUS 2
Curator Summary
Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Mutants have trichomes that appear glass-like under a dissecting microscope as compared to the wild-type trichomes. The mutations do not affect trichome growth or branch number.
Computational Description
homeodomain GLABROUS 2 (HDG2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, trichome morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1); Has 8730 Blast hits to 8651 proteins in 460 species: Archae - 0; Bacteria - 0; Metazoa - 6110; Fungi - 222; Plants - 2153; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-12-B08 introduced

  • F09920 - Specific phenotypes were NOT observed.
  • F16312 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found