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RAFL09-12-E16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01764)

full reading [+] show sequence

Nucleotide sequence: RAFL09-12-E16 - full reading 
GACTCTCTCC TCTTTTGTGC TCCCAAACCA AACATAACAC TCACAATTTA 
ACTCTCTCTG TCTCTCTCTC ATATCTCTCA CTTCTTCTCT TTCTTTTTAA 
GTCCCCAAAA TAACCTCGAG ATCGATGGAC TCAAATCTGT TCATAACTCC 
CACTTCTTCT CTCAAATCCC AAGCCTTGGT CTCTTCATCA TCCTAACTAT 
ATAAGAAAAA GAAAAAACAA CGTAAAGTTT CTGCCATAAA TCATGAGACC 
AATATTAGAC CTCGAAATTG AAGCTTCATC GGGCAGTAGT AGCAGCCAAG 
TGGCCTCAAA CTTGTCTCCG GTTGGGGAAG ATTACAAACC AATCTCGCTG 
AATCTTAGCC TCAGTTTCAA CAACAACAAC AACAATAATC TGGATCTTGA 
ATCATCGTCT TTGACGCTGC CACTTTCGAG CACGAGTGAG AGTAGTAACC 
CGGAGCAGCA GCAGCAACAA CAACCATCTG TATCAAAGAG AGTCTTCTCT 
TGTAACTACT GCCAAAGGAA GTTCTATAGC TCTCAAGCGC TAGGTGGTCA 
CCAAAACGCT CACAAACGTG AGAGAACACT CGCCAAACGC GCTATGCGTA 
TGGGTCTTGC TGGGGTCTTC CCCGGTAGAG GATCAAGTAG CAATTATGCG 
GCTGCTGCCA CAGCAGCCGC TCTCTCGTGT TTGCCGCTTC ACGGAAGCGG 
AAACGGGAAC ATGACATCGT TCAGGACTTT GGGAATCCGG GCACATTCCT 
CGGCGCACGA CGTCAGCATG ACAAGGCAGA CACCAGAAAC ACTTATTAGA 
AACATTGCCA GGTTCAACCA GGGGTATTTC GGTAATTGTA TACCTTTTTA 
CGTGGAGGAC GACGAGGCCG AGATGCTCTG GCCGGGGAGT TTCCGGCAAG 
CTACGAATGC GGTTGCGGTT GAAGCGGGTA ATGATAATTT AGGTGAAAGA 
AAAATGGATT TCTTGGACGT CAAGCAAGCG ATGGATATGG AAAGTTCTCT 
TCCAGATCTA ACCTTGAAGC TTTGAGCTTT CGTTTTTTTT GTTTTTTTTT 
TTGCTGAATT TGGATTCTTA ATTTGGTGCA TCAGCTTCAT AACTCTATTA 
TGTACAGTGA GAGTTTCACA AACC

Gene models with high sequence identity

  1. AT1G66140.1 [+] show detail - zinc finger protein 4
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Zinc finger, C2H2-type 0
superfamily C2H2 and C2HC zinc fingers 4.6e-07
ProfileScan Zinc finger, C2H2-type 11.427
HMMPanther WILMS TUMOR, WT1 0.00057
HMMPanther EARLY GROWTH RESPONSE PROTEIN 0.00057

See the detailed result >

AT1G66140.1

Model type
Protein coding
Short Description
zinc finger protein 4
Curator Summary
Encodes a zinc finger protein containing only a single zinc finger.
Computational Description
zinc finger protein 4 (ZFP4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 7 (TAIR:AT1G24625.1); Has 1119 Blast hits to 1118 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 4; Plants - 1103; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-12-E16 introduced

  • F05938 - rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::decreased width / cauline leaf::decreased size / stem::abnormal / whole plant::decreased height / sporophyte vegetative stage::decreased speed / seed::present in fewer numbers in organism / rosette leaf::dark green / rosette leaf::dark green / rosette leaf::epinastic / rosette leaf::abnormal / rosette leaf::decreased width / rosette leaf::present in greater numbers in organism / cauline leaf::decreased size / stem::decreased thickness / cauline leaf::dark green / fruit::abnormal / fruit::decreased length
  • F15608 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found