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RAFL09-12-L09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01667)

full reading [+] show sequence

Nucleotide sequence: RAFL09-12-L09 - full reading 
GATCGCATGT GGTAGTTCCT TTTTGGATCA GTGGTTTTTG AAATGGAGAA 
AGTTTCGTCG CCGTCTTCCT CTTTTTCACG GAGGTCTGCT TATCTTGAAG 
CTCTTACACA AGAGATTAAG AAGAAGCTTA CACGGGCTGT TGTCTCTCCA 
GCACAAACAC GCAACTTGTT ACAAGACTTA TTTGCTGATA TAGCTCTCGA 
AGTAGACGAT CGAGCCAAAG ATGTGATCCT TAGCAAAGAA GAGGATTTGA 
TTACTTCTGA TGAAGCAGAT GCTGATGGTC CGTTATGCTT TTTCGATGTC 
CTTGCTGATT ACTATGTGAA AGTGTCTGAG AGGGGGAAGG ATATACTTGA 
TTTGATGGTG CAGCTGTGGA GCCAGTCCTT TGCATCACAT ATATTCTCTC 
TACTGTTCCA TAAATGGCTG TTTGAGGTTG AGCTTGACAA TCAAGAAATA 
CTCCTGCGAT ATTCTTCGGC TCTGGTGCAG GGAGCAACAA ATGTGTTCTG 
GATAGACATC CAGACAAATA CGAGGCGCTT CCAAAGTCTC TTTCGGTATC 
TCCTTGAGGA AGTTGCTTTG GAGCAGATAC GATTGAAAAA ATTCCCATTC 
AGGCTCAGAG GGAACTGTAT CTCTTACTCT CTAGGTTCAT TTTCTTTTAC 
AATTCAGTGG ATAAACTCGA TAGCTTCTTG AGGAACTTCC CAGAGTTTCC 
AAATGCTTTC TTGATTGGAG GACCTGGAGA TTTCCTTGTT ATCGAACTAA 
CTGATCAGCT GCAAAAACTG AAGGTGGAAC CAGTGCTGCT ACATTATCTT 
TCTCAGATGA AGATTCTTCA AGGTATGGAA CTGAGAATGA CTACTAGCAC 
AAGGTTAAAG GCGTGTTTAT ACAGTTTTAC CTCTCCTGGA GGTCCAATGT 
ACCCGACAAG AGCCGTCCGT CATGCAGCCT GGGATGCTTT GGATTCCCTC 
TTTCCTGTTG GGCGTTACCC GAGGCATCTC ATTAGTCTAT TTTTCAGGCT 
GCTATATCCG TGGTACTGGC CATCCTCATG CTGGAACTTT GTGGTTTCTT 
GCATTAAGGC GGTACTCTAT TCTATCGTAA GGCTCATCTT TTCACGGCGA 
GAAAAGCCAA GGCAGAGCTG AATAGCTTTT ACTTTTGATG AAGCTTACAG 
CAGGAATCCA ATCCTTGTGT ATATAATGTG GTTTTGGTCA AAGAGGCAAA 
CCAGTGAACC TTACCTTCAC CTGTATTACT GTCTACAGAG AAGATAAACT 
CCGTTTTGTG AAAGATCCCA TGGATAAGCT TTTGACTTGT TTTGTTGTCA 
TTGGTAAAAT TGTTATTTTG CTATAGAGGA CGTGTATTGT GTCCAGAAAC 
CCTTCTTGTG TAGAAGATAA ACCATTTCGG CCTTCTGTTT TAGTTGTATT 
GGATCTGTAA GAACTAAGAA CCCTTAAACT TTTCACCATT CATGGACCAT 
GATATCATCT

Gene models with high sequence identity

  1. AT5G59960.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
    E-value: 0; Score: 99.93

 

InterPro Scan Digest

See the detailed result >

AT5G59960.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-12-L09 introduced

  • F11926 - Specific phenotypes were NOT observed.
  • F13614 - Specific phenotypes were NOT observed.
  • F14648 - Specific phenotypes were NOT observed.
  • F21725 - Specific phenotypes were NOT observed.
  • F27309 - seed::increased length
  • F29150 - rosette leaf::decreased size / rosette leaf::abnormal / rosette leaf::present in greater numbers in organism / cauline leaf::decreased size / stem::decreased thickness / sporophyte vegetative stage::decreased speed / rosette leaf::increased width / rosette leaf::abnormal / cauline leaf::decreased size / stem::decreased thickness

Mutant lines with disrupted or induced

12 mutant lines found