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RAFL09-13-B09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01703)

full reading [+] show sequence

Nucleotide sequence: RAFL09-13-B09 - full reading
GTCTTCCGTT GCGTGAGATA TTATTGAACG GTGTTTGTTA TTCGGAGAAG 
AAGAAGAAGA AGAACTGAAG AAGCATATTC GACGGTCACC ACCAAACCTC
TTCCGTCGGA TTTTCACTCT CCGTTTATCG AACATCTGAG ATCTCTCTCC
ACTTCCGTCA CCGAAGATGC ATTCCAGTCA TCTTCTTCTC GAGGAGCCGA
TCAGGATGGC TTCAATCCTC GAGCCTTCCA AATCTAGTTT CTTCCCGGCA
TTGACTAAGA TCGTCGGAAC TCTAGGTCCT AAATCCCGAT CCGTCGAGGC
TCTCTCCGGC TGTCTCAAAG CCGGCATGTC TGTGGCTCGA TTTGATTTCT
CGTGGGGAGA TGCTGATTAT CACCAGGAGA CACTTGATAA TTTGAAAGTT
GCTGTGAGGA GCACTAAGAA GCTTTGTGCT GTTATGCTTG ATACTGTTGG
ACCTGAGCTA CAAGTTATTA ACAAATCTGA GAAAGCTATT ACTTTGAAAG
CTGATGGCCT TGTAACTTTG ACACCGAATC AAGATCAAGA AGCTTCTTCT
GAAGTTCTTC CCATTAATTT CAATGGACTT GCCAAGGCAG TGAAGAAAGG
AGACACCATC TTCGTTGGGC AATACCTATT CACTGGTAGT GAAACAACTT
CAGTTTGGCT CGAGGTTGAT GAAGTTAAAG GAGATGATGT CATTTGCCTT
TCAAGGAATG CTGCTACTCT GGCTGGTTCT TTGTTCACTT TACACTCCTC
TCAAGTTCAC ATTGATCTCC CAACGCTTAC AGAGAAGGAT AAGGAGGTTA
TAAGCACATG GGGAGTTCAA AATAAAATCG ATTTTCTCTC ATTGTCTTAT
TGTCGTCATG CTGAGGATGT TCGCCAGACC CGTGAAATGC TTAAAAAGTT
GGGCGACCTC TCTCAAACAC AAATATTTGC TAAGATTGAG AACGTAGAGG
GACTAACCCA CTTCGATGAG ATTCTACAAG AAGCTGATGG CATTATTCTT
TCTCGTGGGA ATTTGGGTAT AGATTTACCC CCGGAAAAGG TGTTTTTGTT
TCAAAAGGCT GCTCTTTACA AGTGCAACAT GGCTGGAAAG CCAGCTGTTC
TTACCCGTGT TGTTGACAGT ATGACTGACA ACTTGCGACC AACTCGTGCT
GAGGCCACGG ATGTTGCTAA TGCTGTTTTA GATGGAAGTG ATGCAATTCT
TCTTGGTGCT GAGACCCTTC GTGGATTGTA CCCTGTTGAG ACAATATCAA
CTGTTGGTAG GATCTGTGCT GAGGCAGAAA AGGTTTTCAA TCAAGATTTG
TACTTTAAGA AGACTGTCAA GTATGTTGGA GAACCAATGA CTCACTTGGA
ATCGATTGCT TCTTCAGCTG TACGGGCAGC CATTAAGGTT AAGGCATCCG
TAATTATATG CTTCACCTCT TCTGGAAGAG CAGCCAGATT GATTGCCAAA
TACAGGCCAA CGATGCCGGT TATTTCTGTT GTCATTCCCC GGGTTAAGAC
AAATCAACTG AAATGGAGCT TTAGTGGAGC TTTTGAGGCG AGGCAGTCAC
TTATTGTCAG AGGCCTCTTC CCTATGCTTG CTGACCCTCG TCACCCTGCG
GAATCTACAA GTGCGACAAA CGAGTCAGTC CTGAAGGTTG CTCTAGACCA
TGGGAAGCAT GCTGGAGTAA TCAAGTCGCA TGACAGAGTA GTGGTGTGTC
AGAAAGTTGG TGATGCATCT GTGGTTAAGA TCATTGAGCT TGAGGATTAA
CTTTTGCCTC GCAAAAACAT TATATAATTG GCTGCATTTT GGGTTGCCTT
GAATTGATGA TAACTCCCAA TGCCGGAGTG AAAATATTAT CTCCGGGACT
TCTGGTTTCT TTTTGTATAC TTAGGAGATT TGATGTCTCT AAGGTTTCAG
CTATATTTGA TTACCTTCAA ATGTACGCAT ATGATAAAAG TATACAATGC
CTAGCAATTT TATAATAAGC TGTTACATTC CCTT

Gene models with high sequence identity

  1. AT3G52990.1 [+] show detail - Pyruvate kinase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Pyruvate/Phosphoenolpyruvate kinase, catalytic core 6.6e-71
superfamily Pyruvate kinase, C-terminal-like 4e-27
superfamily Pyruvate kinase, beta-barrel-like 0.000000014
Gene3D Pyruvate/Phosphoenolpyruvate kinase, catalytic core 1.4e-66
Gene3D Pyruvate kinase, alpha/beta 6.3e-18
HMMPfam Pyruvate kinase, barrel 2.9e-93
HMMPfam Pyruvate kinase, alpha/beta 8.2e-23
HMMPanther Pyruvate kinase 5.2e-206
HMMTigr Pyruvate kinase 2.5e-99
FPrintScan Pyruvate kinase, barrel 1.2e-43
FPrintScan Pyruvate kinase, barrel 1.2e-43
FPrintScan Pyruvate kinase, barrel 1.2e-43
FPrintScan Pyruvate kinase, barrel 1.2e-43
FPrintScan Pyruvate kinase, barrel 1.2e-43
FPrintScan Pyruvate kinase, barrel 1.2e-43

See the detailed result >

AT3G52990.1

Model type
Protein coding
Short Description
Pyruvate kinase family protein
Computational Description
Pyruvate kinase family protein; FUNCTIONS IN: pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity; INVOLVED IN: response to cadmium ion, glycolysis; LOCATED IN: membrane; EXPRESSED IN: guard cell, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: Pyruvate kinase family protein (TAIR:AT2G36580.1); Has 9836 Blast hits to 9793 proteins in 2683 species: Archae - 167; Bacteria - 5933; Metazoa - 534; Fungi - 219; Plants - 549; Viruses - 0; Other Eukaryotes - 2434 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-13-B09 introduced

  • F05535 - Specific phenotypes were NOT observed.
  • F12226 - rosette leaf::dark green / rosette leaf::increased size / cauline leaf::decreased size / stem::increased thickness / stem::increased thickness / stem::abnormal / cauline leaf::dark green / sporophyte vegetative stage::decreased speed / stem internode::decreased length / stem::abnormal / root::present in greater numbers in organism / rosette leaf::dark green / rosette leaf::increased size / cauline leaf::increased size / cauline leaf::dark green / cauline leaf::abnormal
  • F12713 - Specific phenotypes were NOT observed.
  • F17624 - rosette leaf::decreased size / cauline leaf::abnormal / whole plant::increased height / fruit::decreased length / stem::abnormal / stem::abnormal
  • F18127 - Specific phenotypes were NOT observed.
  • F27304 - Specific phenotypes were NOT observed.
  • F29721 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

15 mutant lines found