1. Home
  2. Full-length cDNAs
  3. RAFL09-13-B09

RAFL09-13-B09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01703)

full reading [+] show sequence

Nucleotide sequence: RAFL09-13-B09 - full reading 
GTCTTCCGTT GCGTGAGATA TTATTGAACG GTGTTTGTTA TTCGGAGAAG 
AAGAAGAAGA AGAACTGAAG AAGCATATTC GACGGTCACC ACCAAACCTC 
TTCCGTCGGA TTTTCACTCT CCGTTTATCG AACATCTGAG ATCTCTCTCC 
ACTTCCGTCA CCGAAGATGC ATTCCAGTCA TCTTCTTCTC GAGGAGCCGA 
TCAGGATGGC TTCAATCCTC GAGCCTTCCA AATCTAGTTT CTTCCCGGCA 
TTGACTAAGA TCGTCGGAAC TCTAGGTCCT AAATCCCGAT CCGTCGAGGC 
TCTCTCCGGC TGTCTCAAAG CCGGCATGTC TGTGGCTCGA TTTGATTTCT 
CGTGGGGAGA TGCTGATTAT CACCAGGAGA CACTTGATAA TTTGAAAGTT 
GCTGTGAGGA GCACTAAGAA GCTTTGTGCT GTTATGCTTG ATACTGTTGG 
ACCTGAGCTA CAAGTTATTA ACAAATCTGA GAAAGCTATT ACTTTGAAAG 
CTGATGGCCT TGTAACTTTG ACACCGAATC AAGATCAAGA AGCTTCTTCT 
GAAGTTCTTC CCATTAATTT CAATGGACTT GCCAAGGCAG TGAAGAAAGG 
AGACACCATC TTCGTTGGGC AATACCTATT CACTGGTAGT GAAACAACTT 
CAGTTTGGCT CGAGGTTGAT GAAGTTAAAG GAGATGATGT CATTTGCCTT 
TCAAGGAATG CTGCTACTCT GGCTGGTTCT TTGTTCACTT TACACTCCTC 
TCAAGTTCAC ATTGATCTCC CAACGCTTAC AGAGAAGGAT AAGGAGGTTA 
TAAGCACATG GGGAGTTCAA AATAAAATCG ATTTTCTCTC ATTGTCTTAT 
TGTCGTCATG CTGAGGATGT TCGCCAGACC CGTGAAATGC TTAAAAAGTT 
GGGCGACCTC TCTCAAACAC AAATATTTGC TAAGATTGAG AACGTAGAGG 
GACTAACCCA CTTCGATGAG ATTCTACAAG AAGCTGATGG CATTATTCTT 
TCTCGTGGGA ATTTGGGTAT AGATTTACCC CCGGAAAAGG TGTTTTTGTT 
TCAAAAGGCT GCTCTTTACA AGTGCAACAT GGCTGGAAAG CCAGCTGTTC 
TTACCCGTGT TGTTGACAGT ATGACTGACA ACTTGCGACC AACTCGTGCT 
GAGGCCACGG ATGTTGCTAA TGCTGTTTTA GATGGAAGTG ATGCAATTCT 
TCTTGGTGCT GAGACCCTTC GTGGATTGTA CCCTGTTGAG ACAATATCAA 
CTGTTGGTAG GATCTGTGCT GAGGCAGAAA AGGTTTTCAA TCAAGATTTG 
TACTTTAAGA AGACTGTCAA GTATGTTGGA GAACCAATGA CTCACTTGGA 
ATCGATTGCT TCTTCAGCTG TACGGGCAGC CATTAAGGTT AAGGCATCCG 
TAATTATATG CTTCACCTCT TCTGGAAGAG CAGCCAGATT GATTGCCAAA 
TACAGGCCAA CGATGCCGGT TATTTCTGTT GTCATTCCCC GGGTTAAGAC 
AAATCAACTG AAATGGAGCT TTAGTGGAGC TTTTGAGGCG AGGCAGTCAC 
TTATTGTCAG AGGCCTCTTC CCTATGCTTG CTGACCCTCG TCACCCTGCG 
GAATCTACAA GTGCGACAAA CGAGTCAGTC CTGAAGGTTG CTCTAGACCA 
TGGGAAGCAT GCTGGAGTAA TCAAGTCGCA TGACAGAGTA GTGGTGTGTC 
AGAAAGTTGG TGATGCATCT GTGGTTAAGA TCATTGAGCT TGAGGATTAA 
CTTTTGCCTC GCAAAAACAT TATATAATTG GCTGCATTTT GGGTTGCCTT 
GAATTGATGA TAACTCCCAA TGCCGGAGTG AAAATATTAT CTCCGGGACT 
TCTGGTTTCT TTTTGTATAC TTAGGAGATT TGATGTCTCT AAGGTTTCAG 
CTATATTTGA TTACCTTCAA ATGTACGCAT ATGATAAAAG TATACAATGC 
CTAGCAATTT TATAATAAGC TGTTACATTC CCTT

Gene models with high sequence identity

  1. AT3G52990.1 [+] show detail - Pyruvate kinase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Pyruvate/Phosphoenolpyruvate kinase, catalytic core 6.6e-71
superfamily Pyruvate kinase, C-terminal-like 4e-27
superfamily Pyruvate kinase, beta-barrel-like 1.4e-08
Gene3D Pyruvate/Phosphoenolpyruvate kinase, catalytic core 1.4e-66
Gene3D Pyruvate kinase, alpha/beta 6.3e-18
HMMPfam Pyruvate kinase, barrel 2.9e-93
HMMPfam Pyruvate kinase, alpha/beta 8.2e-23
HMMPanther Pyruvate kinase 5.2e-206
HMMTigr Pyruvate kinase 2.5e-99
FPrintScan Pyruvate kinase, barrel 1.2e-43
FPrintScan Pyruvate kinase, barrel 1.2e-43
FPrintScan Pyruvate kinase, barrel 1.2e-43
FPrintScan Pyruvate kinase, barrel 1.2e-43
FPrintScan Pyruvate kinase, barrel 1.2e-43
FPrintScan Pyruvate kinase, barrel 1.2e-43

See the detailed result >

AT3G52990.1

Model type
Protein coding
Short Description
Pyruvate kinase family protein
Computational Description
Pyruvate kinase family protein; FUNCTIONS IN: pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity; INVOLVED IN: response to cadmium ion, glycolysis; LOCATED IN: membrane; EXPRESSED IN: guard cell, cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: Pyruvate kinase family protein (TAIR:AT2G36580.1); Has 9836 Blast hits to 9793 proteins in 2683 species: Archae - 167; Bacteria - 5933; Metazoa - 534; Fungi - 219; Plants - 549; Viruses - 0; Other Eukaryotes - 2434 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-13-B09 introduced

  • F05535 - Specific phenotypes were NOT observed.
  • F12226 - rosette leaf::dark green / rosette leaf::increased size / cauline leaf::decreased size / stem::increased thickness / stem::increased thickness / stem::abnormal / cauline leaf::dark green / sporophyte vegetative stage::decreased speed / stem internode::decreased length / stem::abnormal / root::present in greater numbers in organism / rosette leaf::dark green / rosette leaf::increased size / cauline leaf::increased size / cauline leaf::dark green / cauline leaf::abnormal
  • F12713 - Specific phenotypes were NOT observed.
  • F17624 - rosette leaf::decreased size / cauline leaf::abnormal / whole plant::increased height / fruit::decreased length / stem::abnormal / stem::abnormal
  • F18127 - Specific phenotypes were NOT observed.
  • F27304 - Specific phenotypes were NOT observed.
  • F29721 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

15 mutant lines found