1. Home
  2. Full-length cDNAs
  3. RAFL09-13-C16

RAFL09-13-C16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07978)

full reading [+] show sequence

Nucleotide sequence: RAFL09-13-C16 - full reading 
CTTTCTCATC TCCTCCATTG GCTCTTATTT CCTCAGTTGC CGTGAAAATC 
TGTAAACGGG TAGTTCATAA TGGCAACTGT GACTGCTTCT TCTAACTTTG 
TGTCAAGAAC TTCACTTTTC AACAATCATG GTGCTTCTTC ATGCTCTGAT 
GTCGCTCAGA TTACCTTAAA AGGCCAATCC TTGACTCATT GTGGGTTAAG 
GTCATTCAAC ATGGTGGATA ACCTTCAGAG GAGATCTCAA GCTAAACCTG 
TTTCTGCTAA ATCCTCAAAG AGATCTTCTA AAGTTAAGAC TGCTGGTAAG 
ATTGTGTGTG AGAAAGGAAT GTCTGTGATT TTTATTGGAG CTGAAGTTGG 
TCCATGGAGT AAAACTGGTG GTCTTGGTGA TGTTCTCGGT GGTCTACCTC 
CAGCTCTTGC TGCTAGAGGC CACCGTGTGA TGACAATTTG TCCTCGGTAT 
GACCAATATA AAGATGCTTG GGACACTTGT GTTGTGGTTC AGATCAAAGT 
TGGGGATAAA GTTGAGAATG TTCGTTTCTT CCATTGCTAC AAACGAGGAG 
TTGATCGTGT CTTTGTTGAC CATCCAATCT TTCTTGCTAA GGTTGTGGGC 
AAAACAGGAT CCAAAATCTA TGGTCCTATA ACTGGAGTAG ACTACAATGA 
CAACCAACTC CGGTTCAGTT TGTTGTGTCA GGCTGCTCTT GAGGCACCAC 
AGGTTCTGAA CCTGAACAGC AGCAAGTACT TCTCTGGACC ATATGGTGAA 
GATGTAGTCT TTGTTGCCAA TGACTGGCAC ACTGCTCTAC TTCCATGTTA 
CCTCAAATCT ATGTATCAAT CCCGCGGAGT CTACATGAAT GCAAAGGTGG 
TCTTCTGCAT TCACAACATA GCCTACCAGG GAAGATTTGC CTTTGATGAC 
TATTCCCTTC TCAACTTGCC CATCAGCTTT AAAAGTTCTT TCGACTTCAT 
GGACGGGTAT GAAAAGCCAG TAAAAGGACG GAAAATTAAC TGGATGAAGG 
CTGCAATTCT GGAAGCTCAC CGTGTCTTAA CAGTTAGTCC ATACTACGCT 
CAAGAACTCA TCTCTGGAGT TGATAGAGGC GTGGAATTGC ATAAATATCT 
TCGAATGAAA ACAGTTTCCG GAATTATTAA TGGAATGGAT GTTCAAGAAT 
GGAACCCGTC TACTGACAAG TACATCGATA TCAAATACGA TATTACCACT 
GTTACAGATG CTAAACCATT GATCAAAGAA GCACTTCAGG CTGCTGTTGG 
ACTTCCCGTG GACAGGGATG TCCCGGTTAT CGGTTTCATA GGGAGATTGG 
AGGAGCAGAA GGGTTCTGAT ATTCTAGTGG AAGCTATTTC CAAGTTCATG 
GGGCTCAATG TTCAGATGGT TATCCTTGGG ACTGGAAAGA AGAAGATGGA 
GGCTCAGATT CTTGAACTAG AAGAGAAGTT CCCAGGGAAG GCGGTTGGAG 
TGGCGAAATT CAACGTGCCA TTGGCTCATA TGATCACTGC TGGAGCTGAC 
TTCATCATTG TCCCAAGCAG GTTTGAGCCG TGTGGTCTCA TTCAGCTGCA 
CGCAATGAGA TATGGAACCG TCCCTATTGT GGCATCTACT GGTGGACTTG 
TGGACACTGT GAAAGATGGC TACACAGGTT TCCACATTGG AAGATTCAAC 
GTCAAGTGTG AAGTTGTGGA TCCAGATGAT GTGATAGCAA CAGCAAAGGC 
TGTGACAAGA GCCGTTGCAG TATATGGAAC ATCCGCAATG CAAGAAATGG 
TCAAGAACTG CATGGACCAA GACTTCTCCT GGAAGGGACC TGCGAGGTTG 
TGGGAGAAGG TACTATTGTC CCTTAATGTG GCGGGAAGTG AAGCCGGAAC 
CGAGGGTGAA GAGATAGCTC CTCTGGCCAA GGAGAACGTA GCGACGCCGT 
GAGAATATGA CTTTTGTTTT GTGTCAAAGT GGTTTGAAGA AAGCGTTGGG 
AAGTTAGGAG TAGGGAAGGT TGAGGAAAAG TAATGTATAT TGGAAATGTT 
AGAGTCTAAT ATAATAATAA AAAAACTTTG TGAACACAAT CAATCATATA 
TAAGTTTATC ATCACAATCA ATAAAAAATG GTAGAATTTT GC

Gene models with high sequence identity

  1. AT1G32900.1 [+] show detail - UDP-Glycosyltransferase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily UDP-Glycosyltransferase/glycogen phosphorylas 4.9e-101
HAMAP Glycogen/starch synthases, ADP-glucose type 33.425
HMMPanther STARCH SYNTHASE 4e-209
HMMPanther GLYCOSYLTRANSFERASE 4e-209
HMMTigr Glycogen/starch synthases, ADP-glucose type 1.2e-202
HMMPfam Starch synthase, catalytic domain 5.3e-72
HMMPfam Glycosyl transferase, group 1 3.7e-20

See the detailed result >

AT1G32900.1

Model type
Protein coding
Short Description
UDP-Glycosyltransferase superfamily protein
Computational Description
UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: protein binding, transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, glucan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: starch synthase 2 (TAIR:AT3G01180.1); Has 13950 Blast hits to 13932 proteins in 3602 species: Archae - 351; Bacteria - 6813; Metazoa - 7; Fungi - 173; Plants - 5477; Viruses - 0; Other Eukaryotes - 1129 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-13-C16 introduced

  • F06029 - Specific phenotypes were NOT observed.
  • F15037 - seed::increased size / seed::increased length
  • F15843 - rosette leaf::epinastic / stem::increased thickness / cauline leaf::epinastic / stem::abnormal
  • F30209 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found