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  3. RAFL09-13-F03

RAFL09-13-F03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01618)

full reading [+] show sequence

Nucleotide sequence: RAFL09-13-F03 - full reading 
ACACATTCTT CTTCAACTAC AAAACAAAAA CACTACTACA CATTCTTTCC 
TCTTGTTCAT TTCAAACCCA AAAATCAAAG TTCGAAGTTG AAAGAAGACA 
TGGTTTTGTC TAAGACAGTT TCCGAATCTG ATGTCTCAAT CCATTCAACT 
TTTGCTTCTC GTTACGTCCG CAACTCTCTT CCACGATTCG AAATGCCTGA 
GAACTCAATC CCAAAAGAAG CAGCTTACCA AATCATCAAC GACGAGCTAA 
TGCTCGATGG TAACCCAAGG CTGAACCTAG CTTCCTTCGT GACCACATGG 
ATGGAGCCAG AATGTGACAA GCTCATGATG GAGTCCATCA ACAAGAACTA 
CGTCGACATG GACGAGTACC CTGTCACCAC TGAGCTTCAG AACCGATGTG 
TTAACATGAT AGCACGTCTC TTCAACGCGC CGCTTGGTGA CGGTGAAGCT 
GCCGTTGGTG TTGGCACCGT CGGATCGTCG GAGGCGATTA TGTTGGCCGG 
TTTGGCTTTT AAGAGACAAT GGCAGAATAA GCGTAAGGCC CAAGGGCTTC 
CTTATGATAA GCCCAATATC GTAACCGGTG CTAATGTCCA GGTTTGCTGG 
GAGAAATTCG CAAGGTATTT CGAAGTGGAG CTTAAGGAAG TGAACCTAAG 
AGAAGACTAT TACGTGATGG ACCCTGTAAA GGCGGTCGAA ATGGTAGACG 
AAAACACAAT TTGTGTCGCT GCCATCCTCG GTTCAACGTT AACCGGTGAA 
TTCGAAGACG TTAAGCTCCT CAACGACCTC CTTGTCGAGA AAAACAAGCA 
AACCGGATGG GACACGCCAA TACACGTGGA CGCAGCGAGT GGTGGGTTTA 
TTGCTCCGTT CTTGTATCCG GAGCTGGAGT GGGATTTCCG GCTACCGTTG 
GTTAAGAGTA TTAATGTGAG TGGTCACAAA TACGGTTTGG TTTACGCCGG 
TATTGGTTGG GTTGTATGGA GAACCAAAAC CGATTTGCCT GATGAACTTA 
TCTTCCATAT CAATTATCTT GGCGCTGATC AACCAACCTT TACACTCAAC 
TTCTCCAAAG GTTCAAGTCA AGTGATTGCT CAGTACTACC AGCTGATTCG 
TCTTGGATTC GAGGGTTATC GCAATGTGAT GGATAATTGT CGGGAAAACA 
TGATGGTACT AAGACAAGGA TTAGAGAAAA CGGGACGTTT TAAAATCGTC 
TCCAAAGAAA ACGGTGTTCC GTTAGTGGCG TTTTCTCTCA AAGATAGTAG 
CCGCCACAAC GAGTTCGAGG TGGCCCATAC ACTCCGTCGC TTCGGCTGGA 
TCGTTCCGGC CTACACGATG CCTGCGGATG CGCAGCATGT CACTGTCCTT 
CGAGTTGTTA TCCGAGAAGA TTTCTCTCGA ACCTTAGCCG AGAGATTGGT 
AGCTGATTTC GAGAAGGTTC TACACGAGCT CGATACGCTT CCGGCGAGGG 
TTCACGCCAA GATGGCTAAT GGAAAAGTTA ACGGTGTTAA GAAGACGCCA 
GAGGAGACGC AGAGAGAAGT CACGGCCTAC TGGAAGAAGT TGTTGGAGAC 
TAAGAAGACC AACAAGAACA CAATTTGCTA ATAAGATTAT TTTATAAACT 
AATATTATTA TTTGTTTTGT CCTTAATTGC GCTCCATAAT TATGGACCTT 
TTTCTTTCTT TGCTGTTTGG ATTATTTTTT GTTTTTCTTT TTGTTAAGTT 
TTGGGATTTG ATATTGCTGA TGGAGAGTGA TTTTTAATGG ATATACACTA 
AATCAATGAA AAATATATAT ATATATATTT TTGTGGGTAT GC

Gene models with high sequence identity

  1. AT2G02010.1 [+] show detail - glutamate decarboxylase 4
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Glutamate decarboxylase 0
HMMPfam Pyridoxal phosphate-dependent decarboxylase 4.3e-102
superfamily Pyridoxal phosphate-dependent transferase, major domain 3.1e-130
Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 1.2e-29
HMMPanther Glutamate decarboxylase 3.5e-239
HMMPanther Pyridoxal phosphate-dependent decarboxylase 3.5e-239

See the detailed result >

AT2G02010.1

Model type
Protein coding
Short Description
glutamate decarboxylase 4
Computational Description
glutamate decarboxylase 4 (GAD4); FUNCTIONS IN: calmodulin binding; INVOLVED IN: carboxylic acid metabolic process, glutamate metabolic process, glutamate decarboxylation to succinate; LOCATED IN: cytosol, nucleus; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Glutamate decarboxylase (InterPro:IPR010107), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate decarboxylase 3 (TAIR:AT2G02000.1); Has 2849 Blast hits to 2845 proteins in 876 species: Archae - 190; Bacteria - 1701; Metazoa - 147; Fungi - 354; Plants - 286; Viruses - 3; Other Eukaryotes - 168 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-13-F03 introduced

  • F03130 - Specific phenotypes were NOT observed.
  • F07037 - rosette leaf::abnormal / stem::abnormal
  • F14526 - rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::epinastic / stem::present in fewer numbers in organism
  • F16146_77 - Specific phenotypes were NOT observed.
  • F19920 - Specific phenotypes were NOT observed.
  • F20511 - Specific phenotypes were NOT observed.
  • F28908 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

13 mutant lines found