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  3. RAFL09-13-F05

RAFL09-13-F05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05429)

full reading [+] show sequence

Nucleotide sequence: RAFL09-13-F05 - full reading 
AGCCGTCACC TCCTACCTCA GACTCTATTA CTCCGGCCGG CGAAATTAGG 
GTTAGAATCT GTAGCTGTTT GGTGAGATAA GAATAATAAA TGGGTCGTTT 
CAAAAACAAT AAGAAGAGTA GGGTCATTGG GAAACCTATT GCGAAGAAAA 
ATCAAGAGGA TGTTAGTCAT GTCACTGGGG ATAAGATTCC CAAGAGTTTT 
GTCTTCTCAA GAATGAAACT TGCTGGCCCT GTTAAACAAC TCCAGATGGA 
TTTGAGGAAG CTCATGCTTC CCTACACTGC TCTCAGTCTT AAGGAGAAGA 
AGCGGAACAC TTTAAGGGAC TTTTTGAATG TATCAGGTCC AATGGGTGTT 
ACACATTTCC TTATGCTTTC GAAAACAGCG TCTTCACTGT CTCTTAGAGT 
AGCAAGAACC CCTCAGGGCC CGACTCTTAC CTTCAAAATT CATCAGTATT 
CCTTAGCATC AGATATAGCT CAGTCTCAGC TTCGACCTAG ATGTCCTCAA 
GATCTTTTCA AGAGTCCTCC TTTGATTGTC CTTTCTGGAT TCGGTTCTCA 
AGAGTTGCAT CTGAAACTGG CAACGATTAT GTTTCAGAAT ATATTCCCAG 
CTATTGATAT TAACACTGTC AAGCTCTCCA CCTGCCAGAG ATTAGTACTC 
TTGAACTACA ACAAAGACAC CAAGCTCATT GATTTCCGGC ATTATTCTAT 
AAGACTTCAG CCTGTTGGAG TATCTCGTAG GATCAGAAAG TTTGTGCAAA 
ATCATCAGGT TCCAGATCTT AGGAATCTGC AGGATGTTAG TGATTTTGTC 
ACCAAGGCTG GTTACGGATC AGAGAGCGAA GGAGATGAAG AAGCGGCAAC 
AGTGACACTA TCATCTGATC TAGGCCGAGT TAACAAAGGT GCCACCAAGA 
GCGCAGTGAA ACTGCAAGAA ATTGGACCAA GAATGACTAT GCAACTCGTT 
AAAGTGGAGG AAGGATTGTG TACAGGAGGA ATCATATTCA GTGAATATGA 
TGTTGATGGA AAGAAAGAAA AGTTAAAGAA GAAACAGGAT GAAGAAGAAG 
AAGAAGATAG TGAAGAAGAA GGCGAAGAGG GTAGTGAAGA AGATGGGGAA 
GACATGGATG AGGATTTTGA AGATTGAAAA GAGTTAAAAT AGAGTAACAC 
TGTTTTCACA TGAGACTTGA GTGTTGTTCA TCAAATTTTG TTCCTTGGAT 
CTCTGAGTAG CGTTGCATCT ATTGTCTGAT TAAACTACAA TTACAAAGCC 
TTTTGTACTA TTAAACTAAA TGTCTTCCCG GAATTCGTAT AATGACCGAA 
TTAAGTC

Gene models with high sequence identity

  1. AT5G61770.1 [+] show detail - PETER PAN-like protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Brix domain 3e-51
ProfileScan Brix domain 32.917
HMMPanther PETER PAN-RELATED 5.2e-152
HMMPanther PETER PAN-RELATED 5.2e-152
Coil coiled-coil 0
HMMSmart Brix domain 3.1e-68

See the detailed result >

AT5G61770.1

Model type
Protein coding
Short Description
PETER PAN-like protein
Computational Description
PETER PAN-like protein (PPAN); CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 946 Blast hits to 859 proteins in 217 species: Archae - 0; Bacteria - 10; Metazoa - 449; Fungi - 173; Plants - 58; Viruses - 18; Other Eukaryotes - 238 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-13-F05 introduced

  • F11707 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found