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  3. RAFL09-13-G15

RAFL09-13-G15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01755)

full reading [+] show sequence

Nucleotide sequence: RAFL09-13-G15 - full reading 
AGATTTTGGT TTTGTGTTGA GAACAACTCC AAAGAGACGA GAAGCAGCGA 
ATCGTACGAG CAGAGAGATA TATGTTTCAT TACGTCGATG ATGGATTCTG 
CTTTATATCA TCCTCGAATC TTTTTCGCTC ACAGCTTCAT CAATGGCTTG 
TATAGTTCTC CTAGGTTTGC TAATACTTGC TGGAGATTGG TTAGTCGTTC 
AAGTTGGGAG ATCAAGGCTA GTGAGAATAG TGATCGCAAT GTGTTCGATG 
AAAATCCTGT TAGGAAAACC GACGGGTCGT TGTTTGATTC TGCTTCGTTT 
GAGACAGTTG ACGCGGAAAT CACGCCTGAG ACTGATGATT TCTTCGTGAG 
TGACGCAGAG GGTGATCCAG ATTGTCCTAC TCAAGGTTAT TCCTCTATTG 
AACTTGCTCT TCAAGCTCTA CGCAAAGGAA AGTTTGTGAT CGTTGTTGAC 
GATGAAACCG GAGATGTTGA AGGGAATCTG ATCATGGCTG CAACTCTTAC 
GAGTCCAAAA GACATAGCTT TTCTGATTAA GAATGGTTCA GGTATTGTCT 
CAGTTGGTAT GAAGAAAGAA AACCTTGAAA GATTAAGCCT TACACTTATG 
TCACCTGAAA TGGAAGACGA AGATTCCTCT GCTCCAACTT TCACCATCAC 
TGTGGATGCA AAATCTGGAA CATCAACTGG AGTATCAGCT TCAGACAGGG 
CGATGACGGT TCTTGCACTT TCGTCTCTCG ATGCTAAACC AGATGATTTC 
AGGAGGCCTG GTCATGTATT CCCTCTCAAG TACAGAGATG GTGGAGTTTT 
AAGGAGAGCT GGTCACACCG AAGCTTCAGT GGATCTAATG ATATTGGCTG 
GTTTACGTCC CCTCTCTGTT CTTTCAGCTA TTCTTGATCA AGAAGATGGG 
TCTATGGCTT CACTGCCGTA TATGAAAAAG CTTGCTACGG AACATGATAT 
CCCCATTGTA TCGTTGACTG ATTTAATCAG ATATCGAAGA AAGCGAGATA 
AGCTTGTTGA GAGAATCACA GTGTCTCGTT TGCCTACCAA ATGGGGTCTT 
TTCCAAGCTT ATTGTTATCG ATCTAAACTC GATGGAACCG AAAATATCGC 
CCTCGTTAAG GGAAACGTTG GAAATGGTGA GGACATTCTG GTGCGAGTGC 
ATTCAGAGTG CTTGACAGGA GACATTTTTG GCTCAGCACG GTGTGACTGT 
GGAAACCAAT TGGACTTAGC CATGGAGTTA ATCGAGAAAG AGGGAAGAGG 
AGTTGTTGTG TATCTCCGTG GCCACGAAGG AAGAGGCATT GGCCTTGGTC 
ACAAGCTTAG AGCTTATAAC TTGCAGGACG AAGGACACGA CACTGTTCAG 
GCCAATGTTG AACTTGGCCT ATCCATTGAT TCTCGTGAAT ACGGTATCGG 
TGCTCAGATG CTACGAGACA TAGGAGTGAG AACAATGAGA CTAATGACGA 
ATAACCCTGC CAAATTCACT GGTCTGAAAG GGTACGGACT CGCTGTAGTT 
GGCCGTGTGC CGGTGGTGAC ACCAATCACC AAGGAGAACA GAAGATATAT 
GGAGACCAAA CGCAAGAAGA TGGGTCACAT TTATATCTCT GATAACAACG 
ATCAGCCATT AGCTTGACCC AAAAGCTTTT GATAGAAACA CACACTTTTG 
AATTTTGTAT TTATAAATTG ATTCATTCTT ATGTAATCAT CAACCACAAT 
TACTTTTTTT CTGGAAGATT TGACATAAAA TCGAATTATA GTTTC

Gene models with high sequence identity

  1. AT5G59750.1 [+] show detail - DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr DHBP synthase RibB 7.2e-69
HMMTigr GTP cyclohydrolase II 4.8e-95
HAMAP GTP cyclohydrolase II 39.401
HAMAP RIBBA_MF_01283 49.719
HMMPfam GTP cyclohydrolase II 3e-74
HMMPfam DHBP synthase RibB 3e-67
Gene3D DHBP synthase RibB-like alpha/beta domain 3.2e-67
HMMPanther GTP CYCLOHYDROLASE II 1.1e-169
HMMPanther GTP CYCLOHYDROLASE II-RELATED 1.1e-169
superfamily DHBP synthase RibB-like alpha/beta domain 3.6e-69

See the detailed result >

AT5G59750.1

Model type
Protein coding
Short Description
DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II
Computational Description
DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II; FUNCTIONS IN: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity; INVOLVED IN: riboflavin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP cyclohydrolase II (InterPro:IPR000926), DHBP synthase RibB (InterPro:IPR000422), DHBP synthase RibB-like alpha/beta domain (InterPro:IPR017945); BEST Arabidopsis thaliana protein match is: GTP cyclohydrolase II (TAIR:AT5G64300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-13-G15 introduced

  • F15237 - Specific phenotypes were NOT observed.
  • F15405 - seed::increased size / seed::increased length
  • F16001 - rosette leaf::abnormal / rosette leaf::increased width / stem::decreased thickness / whole plant::decreased height / rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::decreased size / cauline leaf::present in fewer numbers in organism / stem::decreased thickness / whole plant::decreased height / sporophyte vegetative stage::increased speed / whole plant flowering stage::premature
  • F16611 - Specific phenotypes were NOT observed.
  • F16628 - Specific phenotypes were NOT observed.
  • F18017 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found