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  3. RAFL09-14-C10

RAFL09-14-C10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01649)

full reading [+] show sequence

Nucleotide sequence: RAFL09-14-C10 - full reading 
AAAAAATATA AATATTTTGA AAAATGAAAC TGGAGCTGGT GTTCATACCA 
TCACCTGGTG ACGGACATCT CCGGCCATTA GTGGAGGTAG CTAAGCTTCA 
TGTTGACCGT GACGACCATC TCTCCATCAC CATCATCATC ATCCCTCAGA 
TGCATGGATT TAGTAGCAGT AACTCTTCTT CTTACATCGC TTCTCTCTCC 
TCTGATTCTG AAGAACGTCT TAGCTACAAC GTTCTCTCCG TCCCTGATAA 
ACCAGACTCC GATGACACCA AACCACATTT TTTCGACTAC ATTGATAACT 
TCAAGCCGCA GGTCAAAGCC ACGGTGGAAA AACTTACTGA CCCGGGTCCA 
CCAGATTCGC CGTCGCGTCT TGCTGGATTC GTGGTGGATA TGTTTTGCAT 
GATGATGATT GATGTCGCTA ATGAGTTTGG TGTTCCCAGT TACATGTTTT 
ACACATCCAA CGCAACGTTT CTTGGATTGC AAGTTCATGT TGAATACCTT 
TACGACGTTA AGAACTATGA CGTTAGTGAC CTCAAGGACT CGGACACTAC 
TGAGCTGGAA GTTCCTTGTT TGACTCGTCC TTTACCGGTT AAGTGTTTCC 
CCTCGGTTCT ATTAACCAAG GAGTGGTTAC CGGTTATGTT TAGACAAACC 
AGAAGATTCC GAGAAACTAA AGGTATTTTG GTAAATACAT TCGCTGAGCT 
TGAGCCTCAA GCTATGAAGT TTTTCTCCGG CGTAGATAGT CCTCTGCCTA 
CGGTGTACAC AGTTGGACCG GTTATGAATC TTAAAATCAA CGGTCCAAAT 
TCATCTGACG ATAAGCAATC GGAGATCCTA CGGTGGCTAG ACGAGCAGCC 
ACGTAAATCC GTTGTTTTCC TCTGTTTCGG AAGCATGGGA GGTTTCCGTG 
AGGGCCAAGC TAAAGAAATC GCAATCGCGC TTGAGCGAAG TGGTCACCGC 
TTTGTCTGGT CTCTTCGTCG TGCTCAACCA AAAGGATCGA TAGGACCTCC 
CGAAGAATTT ACGAATCTTG AGGAAATTCT CCCGGAAGGA TTCTTGGAAC 
GGACGGCAGA GATAGGAAAG ATTGTAGGTT GGGCTCCACA AAGCGCCATT 
CTAGCAAATC CTGCGATCGG AGGGTTCGTG TCGCATTGTG GATGGAACTC 
GACGCTAGAG AGTCTATGGT TCGGAGTTCC GATGGCTACG TGGCCGCTTT 
ACGCAGAGCA ACAAGTTAAC GCGTTCGAGA TGGTTGAGGA GCTAGGGCTA 
GCGGTGGAGG TCCGAAATAG TTTCCGAGGA GATTTCATGG CGGCGGATGA 
TGAGTTGATG ACGGCAGAGG AGATAGAGAG AGGGATCCGG TGTTTGATGG 
AGCAGGATAG TGACGTGAGG AGTAGAGTGA AGGAGATGAG CGAGAAGAGT 
CACGTAGCTT TAATGGACGG TGGATCTTCG CACGTTGCTC TTCTAAAGTT 
TATTCAAGAC GTCACTAAGA ATATCTCTTG AATCTAAGAT GATGAGGCTC 
GTCTCAGAAG ACGAAGAAAC ATATATATTA GCACTTATAA GAAAAAGACA 
TGTTGGCAGA GATTCAAGAC ATATATCTCT TGAACCAGAT TAGTAACTTA 
CTGTATTTTT TCTTTCTTTA CTTGCATTGA TATTAAAATT ACATTCACTG

Gene models with high sequence identity

  1. AT3G21760.1 [+] show detail - UDP-Glycosyltransferase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam UDP-glucuronosyl/UDP-glucosyltransferase 1.5e-24
Gene3D no description 2.2e-16
superfamily UDP-Glycosyltransferase/glycogen phosphorylas 4.2e-40
PatternScan UDP-glucuronosyl/UDP-glucosyltransferase 0
HMMPanther UDP-GLUCOSYLTRANSFERASE 6.7e-132
HMMPanther UDP-glucuronosyl/UDP-glucosyltransferase 6.7e-132

See the detailed result >

AT3G21760.1

Model type
Protein coding
Short Description
UDP-Glycosyltransferase superfamily protein
Curator Summary
Encodes HYR1, a UDP glycosyltransferase (UGT). HYR1 glucosylates hypostatin, an inhibitor of cell expansion in vivo to form a bioactive glucoside.
Computational Description
HYPOSTATIN RESISTANCE 1 (HYR1); FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 71B6 (TAIR:AT3G21780.1); Has 7489 Blast hits to 7432 proteins in 389 species: Archae - 0; Bacteria - 261; Metazoa - 2177; Fungi - 28; Plants - 4962; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-14-C10 introduced

  • F00635 - seed::decreased size / seed::decreased length
  • F03220 - Specific phenotypes were NOT observed.
  • F04832 - Specific phenotypes were NOT observed.
  • F07712 - Specific phenotypes were NOT observed.
  • F15010 - Specific phenotypes were NOT observed.
  • F22047 - Specific phenotypes were NOT observed.
  • F22927 - seed::decreased length
  • F29744 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found