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  3. RAFL09-14-D01

RAFL09-14-D01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17645)

full reading [+] show sequence

Nucleotide sequence: RAFL09-14-D01 - full reading
CCGACAATCT CTCCATTTCT CTCTCTTCCG TCTCTTTTTT TATCTCTCTC 
TCTAGAATCT TGAAGAGAGC GAGCTTCCAT TAAAATCTCA TTCTAACGAT
CTCCAAGCTC TTTCTTCAAT CATCTCCAGG GGAATGTCAG AGAGTACTAA
TGAAGATAGT GGAGCAGGAA GATCATCACT GGAAGAGAAT TCAAATGGAC
AAAGAAGTCA ATCAGAAGAA GCAATCGCTG AGTGGCGTTC TTCTGAACAA
GTTGAGAATG GAACTCCTTC TACATCTCCA CCGTATTGGG ACATCGATGA
TGATGACGAT TTTGGATCAA AACCATCTCA ACTATTTGGG AAAAATACTT
GGACGATTGA GAAATTTTCA GATATCAACA AACGAGAGCT CCGCGGCGAT
GTTTTTGAAG TCGGGGGTTA CAAATGGTAT ATATTAATTT ATCCACAAGG
GTGTGATGTT TGCAACCATC TCTCTTTGTT TCTATGTGTT GCACACCATG
AAAAGCTTCT TCCAGGCTGG AGTCATTTTG CTCAGTTTAC TATAGCTGTG
TCGAATAAAG ATCCGAAGAA GTCAAAGCAT TCAGATACGT TACACCGGTT
TTGGAAGAAA GAGCATGATT GGGGTTGGAA GAAATTTATT GAGTTACCTA
AATTGAAGGA AGGGTTTATA GATGATTCTG GTTGTCTTAC AATTAAAGCT
CAAGTGCAGG TGATCAGAGA GAGAGTGGAC CGACCTTTTC GCTGCCTTCA
TTATAAATAT AGGGAGGAAC TTGTTAGGGT GTATTTGGGA AATGTAGAGC
AAATTTGCTG GCGGTTTGTG GAAGAGAAAA GAAGCAAGCT TGGTAGGTTG
ATAGAGGACA AGGCAAAATG GAAAAGCTTC TGTGCTTTCT GGATGGGGTT
GGACCAAAAT TCAAGGCGTC GAATGTCCCG AGAGAAAATG GATGTGATTC
TAAAAATAGT TGTAAAACAC TTCTTTGTCG AGAAGGAAGT TACATCTACT
TTGGTGATGG ATTCCTTGTA TAGTGGATTG AAGGCTCTTG AAGGCCAAAA
TAAGAACAAG GAGAGTAGGC CGAGACTAAT GGATACTGAA GAATCCACAG
CTCCAATTGT TAGCGTGGAC AAAGATTCGT TTGCATTAGT TGATGATGTG
TTATTACTCT TAGAGAAGGC TGCTCTGGAG CCATTGCCTA AAAAAGAGGA
AAAGAGTTCT CAAAACCGTA CGAAGGATGG GAATGCTGGA GAGGAATTCA
GTAGAGAAGC CGTTGAGCGT GATGATAGGC GTTTAACTGA ATTGGGTAGA
CGGACTGTGG AGATATTTGT TCTTGCACAT ATCTTCAGGT AATAAGGCAT
AATTTTTCCT CTTTGTTTTT TTATTTGGTG CACCAGGCAT AATTTTGCCT
TTGCTTTAAA ATTTCCATAC AAGTGAATCA TAAGCACATA ATTTGTTTAC
AAGCTAAGAC ATGCGTGACG ATCTTATTCT GAAACCGCTG ATAGTGTTTA
TTTTGTATTT CTGGTCTTCT GGTATTGTGT GTCTTTGTGT TCTTAGCTGT
ACCTCATGTA TAGCACTGCA ATCTTTCTGA GAAATGCAGC AACAAAATTG
AAGTTGCATA CCAAGAAGCT ATTGCATGGA AAAGGCAAGA AGAACTTATT
CGTGAAGAAG AGGAAGCGTG GCTGGCAGAA AGCGAACAGA AGGGCAAAAG
AGGAGCATCT GAAAAAGAGA AGAAATCTAA GAAGAAACAG GCGAAACAGA
AAAAGAACAA AAACAAAGGA AAGGAAATGA GGAAAGAAGA CAAGGTGAGA
ACCCAAACAG AAGAAAGGGA AATTGAGAAA GAGGAATGTG TGAGAGCGAT
AGCAGAATCG TCAGCTGAAA AACCTGACAC ACTTGGAGAT GTCTCTGACG
TGTCTGATTC AGTAGATAGT TCAGCTGAAA TACTTCAGCT TGATTCAGAA
GATAGAGAGA GTAGTCCTGT TCATTGGGAA ATGGATGCCT CAGAGGTTCA
TCCTCCTTCT GCAGGAGACA CTAGCAGAGG AAGAGGCAAT TCTTTTTCTA
TACCTAATGG AGTTGCAGAA AGAAAGGGTC TGTCCACAAT GGATGATAGT
TCTTCAACCT GTTCTAATGA CTCGATTCAA TCAGGGGTAG CCAATGGGTC
ATACAAAGGG AATGTATTAA ATTGCCAAAG CCAAAAGTGG TTTAGCAATG
GAAAAATACA ACCAGGAAAA GTATCTGATT CCAACAGTTT AGCCAGTGAA
AAAGAGCATC AACCTTCAAG ACTTGCATCT GACCCTAAAA ATCAGAGCCA
TTCTTCTGAT ATACGCAGAG TTGGTGAAGC TGACATAGTT ATCTCCCACA
TTCAAAAACC AGAGAGCCCT AAGGAACGTA GTCCTGTTAG CAAGGATCCC
AACATGATTC AGATGAAAGA GAAAAGTGCT GCGGTACTTT CCCCATCCAG
AGCTGCTCCT TGGAATCCTC CGTCTCCAGT GCAAGCAAAA CCGGAGAAAA
AGGGTGTTTC AAATGTAGAG GCGGTTCCAA ACAGGAAAGT CATATCTGTT
AAATCACCTT CATCACATCA TGCATCACCA TCTCGTGAAG CTCAGTTGCA
AACAGTGGGT CCTAGAGCTG ATATACAGAA AATCGCTTCT CCGAAACCTG
TGGAACAACC AGCACCTCCT ATGTCAAGGC CTTTGAGTGC TCCTATAATC
CCTCCAACGC AAGCTGCACC TGTAATATCT GCTGTTCAAA CCTCGACTGC
GTCCCTTGCT CGTTCAATGA GCTCAACAGG GCGTTTAGGT TCACCGACAC
ATAGCCAAGC TTACAATCCT CAATCCTACA AACATGCCAT AGTGGGTTCA
TCTGGTTTCA CCCACCCAAG CTCTCAATCG AGTGGAACAA GCACATTGCC
GCCTTATTCA CATCCGTCTC CTATCTCAGT ATCAAATCAG TCTGGTTTCC
CTATCAATGT TGGCTCTTGG GATGTTTCTT CTGGTGGGCT ATTGTGGACC
GGTGGTTCGA GTTCAACCAG AGATACAACA ACAACCATCA GCGGGAATCA
CAAAACAAAC ACTTACAACG CACCCGTAGT AACTACCAGC ATCAGGCCTA
CTAATGTTCA GATAGGGAGA ACGGCACAGA GTCTGATGAC CGATGAGTTC
CCTCACCTTG ATATCATCAA TGATCTGCTT GCAGACGAAC ACGGTACAAT
GGATAATAGC GTATACCGTG TACCACAACA GTTCAACAAC CAGTACTCAT
ATCATGGCGG TGCGGATCTC GGGATCTCTA GCAGGTCTAG GAGTTACAGT
GATGATGGAT TTCACCAGTC TTACGGTGAA TACATGCCAC ATTCTGCTTC
TTCCTCGCCA TATGGTAATG GGCAAACACA ATCGCAATGG CAGATGGCAA
ATATGGATTT CTCTTTACCG GCTATGAGGA ACCAAGACGA TGTATCAGCA
TCAGCAACAG CTACTTACTC TTACTTTGAT TTAGATTCAT CAAACCCGAA
TTTGTCTGGA ATCAACGGCT ATAGGGACTT CAGGCCATCG AACGGACACT
GAGGTTTGGG TTTAAAGAGT GGCATTGCAT TGTAATGTTT ATTATATAAA
GATGGAAAGC AAAAAACATT TGTGTAAAGA GAGTTTTCGT CCTCTTCGTT
TCAAATGAAT CCTTTTTTCT CAAAAAAAAA A

Gene models with high sequence identity

  1. AT5G43560.2 [+] show detail - TRAF-like superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan MATH 24.38
HMMPanther TRAF-LIKE AND MATH DOMAIN-CONTAINING 2.7e-132
HMMPanther UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELAT 2.7e-132
HMMPanther TRAF-LIKE AND MATH DOMAIN-CONTAINING 5.6e-169
HMMPanther UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELAT 5.6e-169
superfamily TRAF-like 1.1e-22
HMMPfam MATH 1.4e-19
HMMSmart MATH 2.4e-16

See the detailed result >

AT5G43560.2

Model type
Protein coding
Short Description
TRAF-like superfamily protein
Computational Description
TRAF-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like superfamily protein (TAIR:AT1G04300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-14-D01 introduced

  • F08233 - Specific phenotypes were NOT observed.
  • F18521 - Specific phenotypes were NOT observed.
  • F19832 - rosette leaf::desaturated green / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / cauline leaf::present in greater numbers in organism / whole plant::decreased height / stem::abnormal / stem internode::decreased length / rosette leaf::epinastic / rosette leaf::abnormal / cauline leaf::abnormal / stem::present in fewer numbers in organism / stem::abnormal
  • F29644 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found