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  3. RAFL09-14-D18

RAFL09-14-D18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01748)

full reading [+] show sequence

Nucleotide sequence: RAFL09-14-D18 - full reading 
AACCAACCTT TCAAAACAGA ACACGAAGAC ATGGACCGAA CACAATCTCC 
AAAGACAGCT CTGTTCGCCG TGTTGGCAAC ACTCCTTGTC TTAACCGTGA 
ACGGCCAGTC ACTTTGTAAC ACACACAGGT TCACCAATAA CCTCGCCTTC 
GCAGATTGCT CTGACCTCTC GGCCTTAGGC TCTTTCCTTC ACTGGACCTA 
CAATGAACAA AACGGTACCG TCTCAATCGC CTATCGCCAC CCTGGAACCT 
CTGCTTCTTC TTGGGTTGCT TGGGGACTTA ACCCAAGTAG TACTCAGATG 
GTTGGGACGC AAGCTCTCGT AGCCTTCACA AACACAACAA CTAACCAATT 
CCAGGCCTAT ACCTCTTCCG TGAGTTCCTA TGGTACGCGG CTTGAACGTA 
GTAGCCTAAG TTTCGGTGTG AGTGGCCTCT CCGCGACTCT GGTCAGTGGC 
GAGGTTACGA TCTTTGCAAC TCTTGAGTTG TCTCCGAATC TGATCACGGC 
CAACCAGCTT TGGCAGGTGG GACCTGTTGT CAACGGTGTT CCTGCGAGTC 
ATCAAACCTC AGGAGATAAT ATGAGATCGA GTGGTAGGAT TGATTTCCGG 
ACTGGTCAGG CATCAGCTGG TGGTGGTGGT TCCGGTGACA GGCTGAGGAA 
GAGAAACACG CATGGAGTAC TAAATGCGGT CAGCTGGGGA GTACTAATGC 
CAATGGGAGC AATGATGGCT CGGTACATGA AAGTCTTCGC CGATCCAACA 
TGGTTCTATC TCCACATTGC CTTTCAAGTG TCGGGTTACG TCATCGGGGT 
AGCCGGTTGG GCCACCGGAA TCAAGCTTGG TAACGACTCA CCAGGCACAT 
CTTACTCAAC CCATCGTAAC CTTGGAATAG CACTCTTCAC ATTTGCCACA 
CTTCAAGTAT TTGCTCTGCT TGTAAGGCCA AAGCCAGACC ACAAATATCG 
AACGTACTGG AACGTGTACC ATCACACCGT TGGATACACA ACCATCATCC 
TCTCTATTGT CAACATTTTC AAAGGATTCG ACATTTTGGA CCCGGAGGAT 
AAATGGCGAT GGGCTTACAT TGGGATCCTC ATCTTTCTTG GTGCTTGTGT 
CCTTATTCTC GAGCCACTCA CTTGGTTCAT TGTTCTTCGC CGTAAGAGCC 
GTGGAGGTAA CACAGTCGCT GCACCAACTT CGAGCAAGTA CTCTAACGGC 
GTCAATGGTA CCACCACCAC TGGACCACAT CACCAGGACG CCTAGTTTCA 
CTTTTTGTTT CTACACTTGT TCTTGTTTGT TCTACTTCTA CTCGATTTTG 
GATTCTTTTT TGATTTGATA TTTTGTAGGC TCATGTATGT ATTATGTATA 
CAATTTTATT CATTGTGTTA TAGATATATC GATTTATGGA GTCAAAT

Gene models with high sequence identity

  1. AT5G35735.1 [+] show detail - Auxin-responsive family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart DOMON related 6.2e-34
HMMSmart Cytochrome b561/ferric reductase transmembrane 2.3e-51
HMMPIR Uncharacterised conserved protein UCP037471 9.1e-286
ProfileScan DOMON related 18.55
ProfileScan Cytochrome b561/ferric reductase transmembrane 33.483
HMMPfam Protein of unknown function DUF568, DOMON-like 4.7e-33
HMMPfam Cytochrom_B561 1.2e-07
HMMPanther FAMILY NOT NAMED 0.0008

See the detailed result >

AT5G35735.1

Model type
Protein coding
Short Description
Auxin-responsive family protein
Computational Description
Auxin-responsive family protein; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b561, eukaryote (InterPro:IPR004877), Uncharacterised conserved protein UCP037471 (InterPro:IPR017214), Protein of unknown function DUF568, DOMON-like (InterPro:IPR007613), DOMON related (InterPro:IPR005018), Cytochrome b561/ferric reductase transmembrane (InterPro:IPR006593); BEST Arabidopsis thaliana protein match is: Auxin-responsive family protein (TAIR:AT5G47530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-14-D18 introduced

  • F10703 - Specific phenotypes were NOT observed.
  • F25210 - Specific phenotypes were NOT observed.
  • F28927 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

5 mutant lines found