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  3. RAFL09-14-J21

RAFL09-14-J21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01771)

full reading [+] show sequence

Nucleotide sequence: RAFL09-14-J21 - full reading
AAGTTGAAAT TCTGATTAGG GTCTTCCTCG ATTCGCTTTT GGTGAATCAA 
ATTTCTTTAA TTTCAGTGAA TACGCTTTTG ACAGGAGGAC CATACTAAGT
CTTGGGAAAA CCCTCTTCAT AGTGGGTTTG ATCTACAATG ATGTATCAGA
CAATTCCCAC GGCACCAACC ATTCGTGGTG GAACTCCAAC AGAGAGTGGT
GATTACGTTG TGACTTTGGA TCAGATTCCA CGGTGGAGTG ATGTTGAGCA
GAGATCATCT TTGGAGGATG AGACAGGAGA TCCAGAACAT TCGAATCCGC
GCTACGCAAA CCCTTTGGCT TCGTCTTCCG AAGCAGGGAG CAGCGGGAAT
GGGATGGTAT CTAAGTTTCC TGTTGATCAC GAGATAAACT CTAGAATATA
CCTTTGGAGA GGGGAACCTT GGAACCTTGA GGTTGATGCT GTTGTAAATT
CGACAAATGA GAACTTGGAT GAGGCACATA GCAGTCCTGG TCTACATGTG
GCTGCTGGAC CTGGCCTTGC AGAGCAATGT GCTACATTGG GTGGATGCAG
GACAGGGATG GCGAAAGTAA CAAATGCCTA TGATCTACCA GCGAGGAGGG
TTATCCATAC AGTAGGACCC AAGTATGCAG TAAAGTATCA TACAGCTGCT
GAGAATGCTC TAAGTCACTG CTATAGATCT TGTCTGGAAC TTCTCATAGA
TAGTGGGCTA CAAAGTATCG CTCTGGGCTG TATATACACA GAAGCCAAAA
ACTATCCCCG AGAACCAGCT GCTCATGTTG CCATAAGAAC TGTTCGCCGC
TTTCTAGAGA AGCAAAAGGA TAAAATCAGT GCCGTTGTTT TCTGTACCAC
CACATCCTCT GATACGGAGA TATACAAACG ATTACTTCCA CTTTACTTTC
CTCGAGATGA ACATGAGGAA GAGGTTGCCA TATCAAAGCT CCCGGCTGAT
GTTGGAGATG AAAATGGTGA GACGGTTATA GACGAACGTA AAATCAGAAT
ACAGGCGCTG CCAAATAAAC CTCCACCCAG ATCTTTTCCA ACTCCACTCG
AGCGCCCTTC TACTGATCTT ACTTTGTTAC GCAGGAACTC GAATCATCTT
GATTCGTATT TGGATCCTGC CTTCATGTCC TTGATTAAGG ATCCAGATGA
AAGGCGCAAA GAACAATGGG AGAAGACTGC ACAAGCACAA AGTGGATTCA
ATTTTGTTAA ATTGCTAGGA TTTGGTGATC TAGGAGGACC CCCTCTCTCT
GCTGCAGAGG AATACTCACT TCATTCGCGA TACCTAGCGA AAGCTAATTC
AATCAACCTT TCCGAGATTG CAGAGATGAA AATTGTCTAT CGTGGTGGTG
TTGACACCGA GGGTCATCCT GTAATGGTTG TTGTAGGAGC TCACTTTTTG
CTGCGATGTC TTGATCTGGA GCGTTTTGTA CTTTATGTTA TTAAGGAATT
TGAACCTGTG ATACAAAAGC CTTATTCGAT TGTCTACTTT CATTCTGCAG
CATCGTTACA AGTCCAACCA GATTTGGGAT GGATGAAAAG ATTAGAACAG
ATACTTGGTC GAAAACACCA GCGTAACCTT CAGGCAATCT ATGTTCTTCA
TCCAACTTTC CACTTGAAGG CTACAATCTT AACGATGCAA TTTTTCGTGG
ATAATGTGGT ATGGAAGAAA GTTGTATATG CAGACCGACT TCTGCAGCTG
TTCAAATACG TTCCTCGTGA GCAGCTGACA ATCCCAGACT TTGTTTTCCA
GCATGATCTT GAAGTTAACG GAGGAAAAGG TCTAATCGTT GACCCAAGAA
CAAAATACGT TTATCAACGG CCATGAACCA AAATCAAAGA CCGTTACTTT
ATTCAGTACT TGTATGTTTG CTTGTGAAAT ATTTCTTCAT TCTTTCATGC
TTATCTTCTC AAGATGATCC TGGGAGCAAA TAAAGTCTTC TTCTTCTTCT
AATGTAATCT AAAGTTTGAA TCTTTTTGTT TATAAATCCA TTTTCTCAGC
ACAC

Gene models with high sequence identity

  1. AT1G69340.1 [+] show detail - appr-1-p processing enzyme family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Appr-1-p processing 3.3e-08
HMMSmart Cellular retinaldehyde-binding/triple function, C-terminal 6.4e-07
HMMPanther GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATE 0
HMMPanther GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATE 0
Gene3D no description 7.8e-44
ProfileScan Appr-1-p processing 22.212
HMMPfam Appr-1-p processing 6.6e-24
superfamily Macro domain-like 1e-40
superfamily Cellular retinaldehyde-binding/triple function, C-terminal 2.2e-14

See the detailed result >

AT1G69340.1

Model type
Protein coding
Short Description
appr-1-p processing enzyme family protein
Computational Description
appr-1-p processing enzyme family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Appr-1-p processing (InterPro:IPR002589); BEST Arabidopsis thaliana protein match is: appr-1-p processing enzyme family protein (TAIR:AT2G40600.1); Has 3597 Blast hits to 3538 proteins in 1210 species: Archae - 64; Bacteria - 1971; Metazoa - 984; Fungi - 140; Plants - 224; Viruses - 8; Other Eukaryotes - 206 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-14-J21 introduced

  • F07811 - seed::increased size / seed::increased length
  • F08410 - rosette leaf::dark green / rosette leaf::dark green / cauline leaf::decreased size / stem::dark green / stem::abnormal / whole plant::decreased height / stem internode::decreased length / cauline leaf::decreased size / stem::increased thickness / cauline leaf::present in fewer numbers in organism / stem::abnormal / cauline leaf::dark green / whole plant::decreased height / sporophyte vegetative stage::decreased speed / stem internode::decreased length / root::present in greater numbers in organism
  • F12450 - rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::epinastic / fruit::increased length / stem::abnormal
  • F22808 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

4 mutant lines found