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  3. RAFL09-14-J21

RAFL09-14-J21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01771)

full reading [+] show sequence

Nucleotide sequence: RAFL09-14-J21 - full reading 
AAGTTGAAAT TCTGATTAGG GTCTTCCTCG ATTCGCTTTT GGTGAATCAA 
ATTTCTTTAA TTTCAGTGAA TACGCTTTTG ACAGGAGGAC CATACTAAGT 
CTTGGGAAAA CCCTCTTCAT AGTGGGTTTG ATCTACAATG ATGTATCAGA 
CAATTCCCAC GGCACCAACC ATTCGTGGTG GAACTCCAAC AGAGAGTGGT 
GATTACGTTG TGACTTTGGA TCAGATTCCA CGGTGGAGTG ATGTTGAGCA 
GAGATCATCT TTGGAGGATG AGACAGGAGA TCCAGAACAT TCGAATCCGC 
GCTACGCAAA CCCTTTGGCT TCGTCTTCCG AAGCAGGGAG CAGCGGGAAT 
GGGATGGTAT CTAAGTTTCC TGTTGATCAC GAGATAAACT CTAGAATATA 
CCTTTGGAGA GGGGAACCTT GGAACCTTGA GGTTGATGCT GTTGTAAATT 
CGACAAATGA GAACTTGGAT GAGGCACATA GCAGTCCTGG TCTACATGTG 
GCTGCTGGAC CTGGCCTTGC AGAGCAATGT GCTACATTGG GTGGATGCAG 
GACAGGGATG GCGAAAGTAA CAAATGCCTA TGATCTACCA GCGAGGAGGG 
TTATCCATAC AGTAGGACCC AAGTATGCAG TAAAGTATCA TACAGCTGCT 
GAGAATGCTC TAAGTCACTG CTATAGATCT TGTCTGGAAC TTCTCATAGA 
TAGTGGGCTA CAAAGTATCG CTCTGGGCTG TATATACACA GAAGCCAAAA 
ACTATCCCCG AGAACCAGCT GCTCATGTTG CCATAAGAAC TGTTCGCCGC 
TTTCTAGAGA AGCAAAAGGA TAAAATCAGT GCCGTTGTTT TCTGTACCAC 
CACATCCTCT GATACGGAGA TATACAAACG ATTACTTCCA CTTTACTTTC 
CTCGAGATGA ACATGAGGAA GAGGTTGCCA TATCAAAGCT CCCGGCTGAT 
GTTGGAGATG AAAATGGTGA GACGGTTATA GACGAACGTA AAATCAGAAT 
ACAGGCGCTG CCAAATAAAC CTCCACCCAG ATCTTTTCCA ACTCCACTCG 
AGCGCCCTTC TACTGATCTT ACTTTGTTAC GCAGGAACTC GAATCATCTT 
GATTCGTATT TGGATCCTGC CTTCATGTCC TTGATTAAGG ATCCAGATGA 
AAGGCGCAAA GAACAATGGG AGAAGACTGC ACAAGCACAA AGTGGATTCA 
ATTTTGTTAA ATTGCTAGGA TTTGGTGATC TAGGAGGACC CCCTCTCTCT 
GCTGCAGAGG AATACTCACT TCATTCGCGA TACCTAGCGA AAGCTAATTC 
AATCAACCTT TCCGAGATTG CAGAGATGAA AATTGTCTAT CGTGGTGGTG 
TTGACACCGA GGGTCATCCT GTAATGGTTG TTGTAGGAGC TCACTTTTTG 
CTGCGATGTC TTGATCTGGA GCGTTTTGTA CTTTATGTTA TTAAGGAATT 
TGAACCTGTG ATACAAAAGC CTTATTCGAT TGTCTACTTT CATTCTGCAG 
CATCGTTACA AGTCCAACCA GATTTGGGAT GGATGAAAAG ATTAGAACAG 
ATACTTGGTC GAAAACACCA GCGTAACCTT CAGGCAATCT ATGTTCTTCA 
TCCAACTTTC CACTTGAAGG CTACAATCTT AACGATGCAA TTTTTCGTGG 
ATAATGTGGT ATGGAAGAAA GTTGTATATG CAGACCGACT TCTGCAGCTG 
TTCAAATACG TTCCTCGTGA GCAGCTGACA ATCCCAGACT TTGTTTTCCA 
GCATGATCTT GAAGTTAACG GAGGAAAAGG TCTAATCGTT GACCCAAGAA 
CAAAATACGT TTATCAACGG CCATGAACCA AAATCAAAGA CCGTTACTTT 
ATTCAGTACT TGTATGTTTG CTTGTGAAAT ATTTCTTCAT TCTTTCATGC 
TTATCTTCTC AAGATGATCC TGGGAGCAAA TAAAGTCTTC TTCTTCTTCT 
AATGTAATCT AAAGTTTGAA TCTTTTTGTT TATAAATCCA TTTTCTCAGC 
ACAC

Gene models with high sequence identity

  1. AT1G69340.1 [+] show detail - appr-1-p processing enzyme family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Appr-1-p processing 3.3e-08
HMMSmart Cellular retinaldehyde-binding/triple function, C-terminal 6.4e-07
HMMPanther GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATE 0
HMMPanther GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATE 0
Gene3D no description 7.8e-44
ProfileScan Appr-1-p processing 22.212
HMMPfam Appr-1-p processing 6.6e-24
superfamily Macro domain-like 1e-40
superfamily Cellular retinaldehyde-binding/triple function, C-terminal 2.2e-14

See the detailed result >

AT1G69340.1

Model type
Protein coding
Short Description
appr-1-p processing enzyme family protein
Computational Description
appr-1-p processing enzyme family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Appr-1-p processing (InterPro:IPR002589); BEST Arabidopsis thaliana protein match is: appr-1-p processing enzyme family protein (TAIR:AT2G40600.1); Has 3597 Blast hits to 3538 proteins in 1210 species: Archae - 64; Bacteria - 1971; Metazoa - 984; Fungi - 140; Plants - 224; Viruses - 8; Other Eukaryotes - 206 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-14-J21 introduced

  • F07811 - seed::increased size / seed::increased length
  • F08410 - rosette leaf::dark green / rosette leaf::dark green / cauline leaf::decreased size / stem::dark green / stem::abnormal / whole plant::decreased height / stem internode::decreased length / cauline leaf::decreased size / stem::increased thickness / cauline leaf::present in fewer numbers in organism / stem::abnormal / cauline leaf::dark green / whole plant::decreased height / sporophyte vegetative stage::decreased speed / stem internode::decreased length / root::present in greater numbers in organism
  • F12450 - rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::epinastic / fruit::increased length / stem::abnormal
  • F22808 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

4 mutant lines found