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  3. RAFL09-14-K11

RAFL09-14-K11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01675)

full reading [+] show sequence

Nucleotide sequence: RAFL09-14-K11 - full reading
AAGAAGGAAG ACGATGATGA TGCTCAGAAT CCGAAGCAGA GATGGACTGG 
AGAGAGTCAC AGCGGAGGGA GCTCATATCA CTGTTTCCCA GCTCAAAACC
TTGATCGCGG ATCAGCTTCA GATCCCTCTC CATAAGCAGA CCTTATCCAC
CAATCGTGAT CTCCTCCTCG CCAAAACTCC CGCTGATCTA CTCGCCTTCA
CCGACCTCAC GGACCCAAAC CTCCCCCTCT CCTCTCTCAA CCTCGGCCAT
GGCTCTATGC TCTACCTCGC CTACGATGGC GAGCGCTCCA TTCCTGGAGC
TCCTCCCGTT ACTCCTGCCG GATCCTTCGG GAGGAAGATG ACCGTCGATG
ACTTGATCGC CCGCCAGATG CGCGTCACTC GTCAGGAGAC GTCTCACTGC
GACTCCGTCT CCTTCGATCG CGATGCCGCC AACGCTTTCC AGCACTACGT
CAATGAGTCT CTAGCTTTTG CCGTCAAGCG CGGCGGCTTT ATGTACGGCA
CCGTCACCGA GGAAGGACAG TGGAAGTTGA TTTCATTTAC GAGCCGCCCC
AGCAAGGCAC GGAGGCTAAT CTTATTCTGA TGAGAGATGC TGATGAAGAG
AAGCGCGTGG ACGCAATCGC CATGGGCTTG GGGATGAGGA GGGTCGGTTT
CATTTTTAAC CAGACCGTGG TGCAGGACAA GACTGAATAC ACTCTGTCCA
ACGCCGAGGT GCTACAGGCG GCGGAGCTTC ACGCCGAGAG CGAGCTGAAG
GAGTGGGTCA CGGCGGTGGT GAAGCTTGAG GTGAATGAGG ATGGTGGCGC
CGATGTCCAT TTCGAGGCGT TTCAAATGAG TGATATGTGC ATCAGGCTGT
TCAAGGAAGA GTGGTTCGAG ACGGAGATTA TGCCGGACGA TGATCCAAAG
CTCTCTAAGA TGAAGAAGGA GGTGGTTGTT GGTGTGAAGG ATCTTAAGGA
GGTAGATAAC GATTTCTTCC TCGTTCTCGT CAGGATCTTG GATCACCAGG
GGCCTCTGTC ATCAACATTC CCAATAGAGA ACCGGAGCAG TCGAGCAACG
ATGCGGGCTC TAAAAACACA TCTGGACCGG GCAAAGAGCT TGCCGTTGGT
GAAGAAGATG TCAGATTTTC ATCTGCTTCT CTTTGTGGCT CAGTTTCTGG
ACGTGTCATC GGACGTCCCT GCTTTAGCCG AGTGTGTGCG TCTGCAGTCG
CCTGTCCCAG AGGGCTATGC GTTGCTCATC GAATCAATGG CCAACACTTG
TTAATTTTTG TGTCATTGTT TTTTGGTTCT TGATACAGTA TATCATGTTC
GTTTTATGGT CCAGAAAATC TTTTTTACTA GTTGACAAAT GAAAAATCTC
TAGTGTACTC GG

Gene models with high sequence identity

  1. AT2G47970.1 [+] show detail - Nuclear pore localisation protein NPL4
    E-value: 0; Score: 99.93

 

InterPro Scan Digest

Program Description E-value
HMMPfam NPL4 1.8e-51
HMMPfam UN_NPL4 0.00000014
HMMPanther NUCLEAR PROTEIN LOCALIZATION 4 2e-65
HMMPanther NUCLEAR PROTEIN LOCALIZATION 4 5.8e-93
superfamily Ubiquitin-like 0.000000002

See the detailed result >

AT2G47970.1

Model type
Protein coding
Short Description
Nuclear pore localisation protein NPL4
Computational Description
Nuclear pore localisation protein NPL4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPL4 (InterPro:IPR007717); BEST Arabidopsis thaliana protein match is: NPL4-like protein 1 (TAIR:AT3G63000.1); Has 392 Blast hits to 392 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 106; Plants - 67; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-14-K11 introduced

  • F28742 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found