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  3. RAFL09-14-K11

RAFL09-14-K11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01675)

full reading [+] show sequence

Nucleotide sequence: RAFL09-14-K11 - full reading 
AAGAAGGAAG ACGATGATGA TGCTCAGAAT CCGAAGCAGA GATGGACTGG 
AGAGAGTCAC AGCGGAGGGA GCTCATATCA CTGTTTCCCA GCTCAAAACC 
TTGATCGCGG ATCAGCTTCA GATCCCTCTC CATAAGCAGA CCTTATCCAC 
CAATCGTGAT CTCCTCCTCG CCAAAACTCC CGCTGATCTA CTCGCCTTCA 
CCGACCTCAC GGACCCAAAC CTCCCCCTCT CCTCTCTCAA CCTCGGCCAT 
GGCTCTATGC TCTACCTCGC CTACGATGGC GAGCGCTCCA TTCCTGGAGC 
TCCTCCCGTT ACTCCTGCCG GATCCTTCGG GAGGAAGATG ACCGTCGATG 
ACTTGATCGC CCGCCAGATG CGCGTCACTC GTCAGGAGAC GTCTCACTGC 
GACTCCGTCT CCTTCGATCG CGATGCCGCC AACGCTTTCC AGCACTACGT 
CAATGAGTCT CTAGCTTTTG CCGTCAAGCG CGGCGGCTTT ATGTACGGCA 
CCGTCACCGA GGAAGGACAG TGGAAGTTGA TTTCATTTAC GAGCCGCCCC 
AGCAAGGCAC GGAGGCTAAT CTTATTCTGA TGAGAGATGC TGATGAAGAG 
AAGCGCGTGG ACGCAATCGC CATGGGCTTG GGGATGAGGA GGGTCGGTTT 
CATTTTTAAC CAGACCGTGG TGCAGGACAA GACTGAATAC ACTCTGTCCA 
ACGCCGAGGT GCTACAGGCG GCGGAGCTTC ACGCCGAGAG CGAGCTGAAG 
GAGTGGGTCA CGGCGGTGGT GAAGCTTGAG GTGAATGAGG ATGGTGGCGC 
CGATGTCCAT TTCGAGGCGT TTCAAATGAG TGATATGTGC ATCAGGCTGT 
TCAAGGAAGA GTGGTTCGAG ACGGAGATTA TGCCGGACGA TGATCCAAAG 
CTCTCTAAGA TGAAGAAGGA GGTGGTTGTT GGTGTGAAGG ATCTTAAGGA 
GGTAGATAAC GATTTCTTCC TCGTTCTCGT CAGGATCTTG GATCACCAGG 
GGCCTCTGTC ATCAACATTC CCAATAGAGA ACCGGAGCAG TCGAGCAACG 
ATGCGGGCTC TAAAAACACA TCTGGACCGG GCAAAGAGCT TGCCGTTGGT 
GAAGAAGATG TCAGATTTTC ATCTGCTTCT CTTTGTGGCT CAGTTTCTGG 
ACGTGTCATC GGACGTCCCT GCTTTAGCCG AGTGTGTGCG TCTGCAGTCG 
CCTGTCCCAG AGGGCTATGC GTTGCTCATC GAATCAATGG CCAACACTTG 
TTAATTTTTG TGTCATTGTT TTTTGGTTCT TGATACAGTA TATCATGTTC 
GTTTTATGGT CCAGAAAATC TTTTTTACTA GTTGACAAAT GAAAAATCTC 
TAGTGTACTC GG

Gene models with high sequence identity

  1. AT2G47970.1 [+] show detail - Nuclear pore localisation protein NPL4
    E-value: 0; Score: 99.93

 

InterPro Scan Digest

Program Description E-value
HMMPfam NPL4 1.8e-51
HMMPfam UN_NPL4 1.4e-07
HMMPanther NUCLEAR PROTEIN LOCALIZATION 4 2e-65
HMMPanther NUCLEAR PROTEIN LOCALIZATION 4 5.8e-93
superfamily Ubiquitin-like 2e-09

See the detailed result >

AT2G47970.1

Model type
Protein coding
Short Description
Nuclear pore localisation protein NPL4
Computational Description
Nuclear pore localisation protein NPL4; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPL4 (InterPro:IPR007717); BEST Arabidopsis thaliana protein match is: NPL4-like protein 1 (TAIR:AT3G63000.1); Has 392 Blast hits to 392 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 106; Plants - 67; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-14-K11 introduced

  • F28742 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found