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  3. RAFL09-14-K16

RAFL09-14-K16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05455)

full reading [+] show sequence

Nucleotide sequence: RAFL09-14-K16 - full reading 
TGGTTCTTCT TCTTCCTCTT CATTTTACTT TCTCTTCCCG ATTTCTCTCT 
GTCCGATTCA CCTTTTCCTC CGATCTCGGT CTCCTTAGAT TCCGGAATAA 
TCCCCTCAAG GCTTGGCTTA GTAATCGTCG TTTTCTCCGC CATGAGTTCC 
AATACGGCGT CGTCCAGCGC GGGGGCAGCC GGATCGGGAG ATTCTTCCGC 
CGCTAGGAAG AATTCAAAGC GACCCAAGTA TTCGAAGTTC ACACAGCAGG 
AGCTTCCAGC TTGCAAGCCA ATTCTAACCC CTGGTTGGGT CATTTCGACA 
TTTTTGATAG TCAGTGTTAT CTTTATTCCC CTTGGAGTTA TCTCCCTTTT 
CGCTTCCCAG GATGTTGTGG AGATCGTTGA TCGGTATGAT ACTGAGTGCA 
TTCCGGCACC TGCTAGGACT AACAAGGTTG CATATATTCA AGGAGATGGA 
GATAAAGTTT GTAACCGGGA TCTTAAAGTG ACAAAGCGTA TGAAGCAACC 
TATCTATGTT TATTACCAAC TTGAGAATTT CTACCAGAAT CACCGAAGGT 
ATGTAAAAAG TCGAAGTGAT TCACAGTTGA GAAGTACAAA ATACGAGAAT 
CAAATAAGTG CATGCAAGCC TGAGGATGAT GTTGGTGGGC AGCCGATTGT 
GCCGTGTGGT CTAATTGCTT GGAGTCTTTT TAACGACACA TACGCGTTAT 
CAAGAAACAA TGTAAGCCTA GCTGTGAACA AAAAAGGCAT TGCATGGAAG 
AGTGACAAGG AACACAAGTT TGGGAACAAG GTCTTCCCCA AGAATTTTCA 
AAAGGGGAAT ATCACAGGTG GTGCTACTTT AGATCCAAGA ATACCGCTTA 
GTGAACAAGA AGATCTCATT GTGTGGATGA GAACCGCAGC ATTGCCAACA 
TTTAGAAAAC TTTACGGAAA GATAGAGTCT GACCTCGAGA TGGGTGACAC 
CATACACGTT AAGCTGAACA ACAACTACAA CACGTACAGC TTCAATGGAA 
AGAAGAAGCT TGTTTTGTCA ACCACTAGTT GGCTGGGTGG GAAGAACGAT 
TTCCTTGGCA TTGCTTACCT GACAGTTGGC GGGATCTGTT TCATTTTGGC 
CCTCGCATTT ACCATCATGT ACCTTGTGAA ACCCAGGCGT CTTGGAGATC 
CGTCCTACTT GTCATGGAAT AGAAATCCTG GAGGTCGGTA ACAAGCTTGG 
AAAGGGAGAG AGAGAGCTCT AATCTGCGTG TGTAAATCTT ATCCATCCAT 
GTACACATAC AATGTAATTT TTGCTTACAT ACTATGTAAT CCTTGCTTGC 
AAAATGGTTT CTTCGGTGAG AGCTTAAATC CCACATAATA CTTTGTTGTT 
GTTGTTCCAA ACCAGTCTAA TATATTACTT TTGTCCCC

Gene models with high sequence identity

  1. AT1G54320.1 [+] show detail - LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPIR Protein of unknown function DUF284, transmembrane eukaryotic 1.5e-230
HMMPanther Protein of unknown function DUF284, transmembrane eukaryotic 5.4e-159
HMMPfam Protein of unknown function DUF284, transmembrane eukaryotic 2.8e-95

See the detailed result >

AT1G54320.1

Model type
Protein coding
Short Description
LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
Computational Description
LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284, transmembrane eukaryotic (InterPro:IPR005045); BEST Arabidopsis thaliana protein match is: ALA-interacting subunit 1 (TAIR:AT3G12740.1); Has 852 Blast hits to 849 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 251; Fungi - 222; Plants - 160; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-14-K16 introduced

  • F12310 - rosette leaf::present in greater numbers in organism / cauline leaf::epinastic / whole plant::increased height / fruit::increased length / stem::abnormal
  • F19629 - Specific phenotypes were NOT observed.
  • F24437 - Specific phenotypes were NOT observed.
  • F24726 - seed::increased size

Mutant lines with disrupted or induced

4 mutant lines found