1. Home
  2. Full-length cDNAs
  3. RAFL09-14-O21

RAFL09-14-O21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01805)

full reading [+] show sequence

Nucleotide sequence: RAFL09-14-O21 - full reading 
GAGAGAGTCA GAGAGTCAAG AGAGAAAAGG GGTCGAGAAT GGCGGTCGCA 
ATATCTGGGA GTAGTTTGAT ATCGTCGACT CTTCAGCATT ATAATAATCG 
GATTTATATC CGAGATTATC CGATTCCGTG TCACTCTTCT AATCCAATTT 
GCAATTCTTT TAATTTCAAA AGACGTTCGT TCTCTCCTTC TTCCCCCAAA 
TTTAACGACC ATGTCGTTAA CCCTTCCTCT TCTTATTTAT CCTCCAAGCT 
TTCTCCAATT CGAACCCATT CCTCTTTCGC TGCGTGTGGC TGCTCCTGGA 
TTCAAGACAA TTCAATGGTT CATGATTATG CTACAACAAC TAATGGGACG 
TCCAAGCGTT GCTCGGCGTT ACCAACAACA AACACAGTGG ATGTCTCTTC 
GGTGTCAGAT CTTTTTGAAT TCATATGCTC GGGTCCTCTC GTAAACAAGA 
TTGGTATCAC TCCTCAAAGA GTTGGCCAGT CTATTGACAA ATGGTTACTC 
TACGGCTCAC AACTTTGTAG ACTGTTTCAG CTTAATGAGC TTAAGCTTAC 
AATTCCTCAG AAAGCTAGGC TATACCACTA CTACATACCC GTTTTTATTT 
GGTGCGAAGA TCAGATTGCT TTGCATAATT CCAAGTTTAA AGATGGAGAT 
GATGTACCTC CTTTAGTGAT TGGATTTAGC GCTCCTCAAG GATGTGGCAA 
GACTACACTT GTGTTTGCAC TTGATTATCT TTTCAAGACA ACAAAAAAGA 
AGTCAGCGAC GATATCCGTA GACGATTTTT ACTTGACTGC AGAAGGCCAG 
GCTGAATTGA GAAAAAAGAA TCCAGGAAAT GCACTTCTAG AGTATCGTGG 
AAATGCAGGA AGTCATGATC TGAAACTTTC TGTTGAAACA CTAGAAGCCC 
TGTCGAAACT GACCAAAGAA GGCTTAAAGA TGAAGGTACC TAGGTACAAT 
AAGTCTGCCT ATAGTGGGAG AGGTGACAGA GCCGATTCAT CAACATGGCC 
TGAAGTTGAA GGACCTCTAT CGGTTATTCT CTTTGAGGGA TGGATGCTTG 
GTTTTAAGCC TCTTCCAGCT GACGTTGTTA AAGCAGTTGA CCCACAGCTG 
GAGGTTGTGA ATAAGAACCT TGAAGCGTAT TACGACGCAT GGGACAAGTA 
CATCGATGCT TGGGTCGTCA TCAAAATCCA GGACCCAAGT TATGTATACC 
GGTGGCGTCT TCAGGCGGAA ATCGCCATGA GGCAGGATGG CCAAGCTGGG 
ATGTCGGATG AGGAGGTGAA TGACTTTGTG TCGCGGTATT TGCCGGCGTA 
TAAGGCCTAT CTTCCAACTC TTTACGCGGA AGGGCCAAGC GGCTCAGACC 
CAGACCGTGT CCTTGCGATA GATATCGATG AAGAAAGGAA CCCGATACTC 
GCAAACTAAT GCGATGCTGT CTCCATTGCC TTTATAGTAT ATCATCATTG 
TATGTAAAAG AGAGTAACAT TACGTTCTTC TTCCTTCTAT TTGACATTCT 
TTTTCCTACA CTATACTTTC ACATAAATAC ATATTCTTTT CTTGAAAAAA 
AAAAAAAAAA

Gene models with high sequence identity

  1. AT1G80380.2 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily P-loop containing nucleoside triphosphate hyd 2.7e-28
HMMPfam Phosphoribulokinase/uridine kinase 3.1e-05
Gene3D no description 2.6e-81

See the detailed result >

AT1G80380.2

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator Summary
encodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle.
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: glycerate kinase activity; INVOLVED IN: photorespiration; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083); Has 1396 Blast hits to 1392 proteins in 215 species: Archae - 0; Bacteria - 214; Metazoa - 0; Fungi - 146; Plants - 53; Viruses - 0; Other Eukaryotes - 983 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-14-O21 introduced

  • F06827 - Specific phenotypes were NOT observed.
  • F09931 - rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in greater numbers in organism / cauline leaf::abnormal / sporophyte vegetative stage::decreased speed
  • F20020 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found